Variant report

Variant	rs10865343
Chromosome Location	chr2:64052392-64052393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:64052304..64056068-chr2:64066396..64069697,6	K562	blood:
2	chr2:64052299..64060510-chr2:64066102..64071144,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10187013	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs10201844	0.89[CHB][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12612549	0.84[CHB][hapmap]
rs12612596	0.81[AMR][1000 genomes]
rs12991311	0.90[CHB][hapmap]
rs13006124	0.85[CHB][hapmap]
rs13384707	0.90[CHB][hapmap]
rs17619717	0.85[CHB][hapmap]
rs4072113	0.95[CHB][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4318375	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs6546025	0.85[CHB][hapmap]
rs6546026	0.85[CHB][hapmap]
rs6546046	0.84[CHB][hapmap]
rs6726257	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs6737855	0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7596262	0.85[CHB][hapmap]
rs7597935	0.84[CHB][hapmap]
rs9309356	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64041800-64054200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:64042800-64052400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:64044200-64054800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:64045600-64054200	Weak transcription	HSMM	muscle
5	chr2:64046000-64053600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr2:64046800-64055000	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:64047200-64054800	Weak transcription	Left Ventricle	heart
8	chr2:64047200-64055000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr2:64047800-64052400	Weak transcription	Fetal Heart	heart
10	chr2:64047800-64066600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:64048400-64054400	Weak transcription	NHDF-Ad	bronchial
12	chr2:64048400-64054400	Weak transcription	NHLF	lung
13	chr2:64048400-64054600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr2:64048600-64054800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:64048600-64054800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr2:64048600-64054800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr2:64048800-64052400	Weak transcription	Aorta	Aorta
18	chr2:64048800-64054600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:64048800-64054800	Weak transcription	Psoas Muscle	Psoas
20	chr2:64049200-64054400	Weak transcription	HepG2	liver
21	chr2:64049400-64054800	Weak transcription	Liver	Liver
22	chr2:64052200-64052600	Active TSS	Adipose Nuclei	Adipose

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