Variant report

Variant	rs10187013
Chromosome Location	chr2:64058819-64058820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10201844	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs10865343	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs10865344	0.94[CHB][hapmap]
rs12612549	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs13384707	0.95[CEU][hapmap]
rs4072113	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[YRI][hapmap]
rs6546025	0.95[CEU][hapmap]
rs6546026	0.95[CEU][hapmap];0.88[YRI][hapmap]
rs6546038	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs6546039	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs6546043	0.82[CEU][hapmap]
rs6546046	0.94[CEU][hapmap]
rs6737855	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs7589241	1.00[CEU][hapmap]
rs7596262	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs9309356	0.95[CEU][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64047800-64066600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:64053200-64064400	Weak transcription	Aorta	Aorta
3	chr2:64053400-64059200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:64055200-64059200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:64055200-64064400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:64055200-64067200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:64055400-64063600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:64055400-64066400	Weak transcription	Psoas Muscle	Psoas
9	chr2:64055600-64064000	Weak transcription	HMEC	breast
10	chr2:64055800-64059200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:64056400-64064200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:64056600-64059200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:64056600-64059400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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