Variant report

Variant	rs4671528
Chromosome Location	chr2:63924709-63924710
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:63924196..63929131-chr2:64067029..64071463,7	MCF-7	breast:
2	chr2:63918680..63921430-chr2:63924139..63927284,3	MCF-7	breast:
3	chr2:63814867..63817469-chr2:63922056..63924960,2	MCF-7	breast:
4	chr2:63924568..63927226-chr2:64063446..64066245,2	MCF-7	breast:
5	chr2:63922943..63924879-chr2:64067283..64069747,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000014641	Chromatin interaction
ENSG00000143951	Chromatin interaction
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10168461	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10200146	0.80[JPT][hapmap]
rs10201844	0.89[CHB][hapmap]
rs10211360	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12612549	0.84[CHB][hapmap];0.85[CHD][hapmap]
rs12713497	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13006124	0.84[CHB][hapmap]
rs13384707	0.89[CHB][hapmap]
rs17619717	0.84[CHB][hapmap]
rs2168274	0.88[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4072113	0.84[CHB][hapmap]
rs6546025	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs6546026	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs6546038	0.84[CHB][hapmap];0.82[CHD][hapmap]
rs6546039	0.89[CHB][hapmap];0.81[CHD][hapmap]
rs6726257	0.83[CHB][hapmap]
rs6737855	0.89[CHB][hapmap]
rs6741298	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741584	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747307	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7597935	0.84[CHB][hapmap]
rs9309356	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63909200-63925600	Weak transcription	Psoas Muscle	Psoas
2	chr2:63919800-63925400	Weak transcription	A549	lung
3	chr2:63920800-63925800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:63921200-63925400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:63923600-63926000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:63923800-63925400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:63923800-63925600	Weak transcription	Adipose Nuclei	Adipose
8	chr2:63923800-63927200	Enhancers	Liver	Liver
9	chr2:63924000-63925400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:63924200-63925400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:63924200-63925400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr2:63924200-63925400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:63924200-63925400	Weak transcription	NHEK	skin
14	chr2:63924200-63925600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:63924400-63925400	Weak transcription	HMEC	breast

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