Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:63918845..63919758-chr2:64115634..64116545,4	MCF-7	breast:
2	chr2:63917225..63919617-chr2:64067727..64070259,2	MCF-7	breast:
3	chr2:63918869..63919742-chr2:64088240..64089096,3	MCF-7	breast:
4	chr2:63918680..63921430-chr2:63924139..63927284,3	MCF-7	breast:
5	chr2:63918879..63919960-chr2:64088096..64089552,8	MCF-7	breast:
6	chr2:63917240..63919967-chr2:64076966..64079284,2	MCF-7	breast:
7	chr2:63918719..63919714-chr2:64088104..64089017,6	K562	blood:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10168461	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10200146	0.94[JPT][hapmap]
rs10211360	0.86[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11676682	0.84[CHB][hapmap]
rs12713497	0.92[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17618390	0.81[JPT][hapmap]
rs2278718	0.81[JPT][hapmap]
rs2421954	0.89[CHB][hapmap]
rs2422008	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs2592389	0.84[ASN][1000 genomes]
rs262496	0.85[CHB][hapmap]
rs262498	0.94[CHB][hapmap]
rs4671526	0.88[ASN][1000 genomes]
rs4671528	0.88[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6735907	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs6737621	0.85[CHB][hapmap]
rs6741298	0.92[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6741584	0.86[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6747307	0.96[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8179835	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63908800-63923400	Weak transcription	Adipose Nuclei	Adipose
2	chr2:63909200-63925600	Weak transcription	Psoas Muscle	Psoas

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