Variant report

Variant	rs2028886
Chromosome Location	chr2:63718737-63718738
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10171190	0.81[CHB][hapmap]
rs10182889	0.85[ASN][1000 genomes]
rs10191163	0.91[ASN][1000 genomes]
rs10195862	0.81[ASN][1000 genomes]
rs10200146	0.81[CHB][hapmap]
rs10209490	0.81[CHB][hapmap]
rs1022351	0.81[CHB][hapmap]
rs1022352	0.86[ASN][1000 genomes]
rs1022353	0.81[CHB][hapmap]
rs1033253	0.86[EUR][1000 genomes]
rs11125968	0.90[ASN][1000 genomes]
rs11125979	0.90[CEU][hapmap];0.90[CHB][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];0.82[TSI][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes]
rs11676682	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11687234	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs11694795	0.93[ASN][1000 genomes]
rs11694892	0.94[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs12465146	0.85[ASN][1000 genomes]
rs12470121	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs12473110	0.83[ASN][1000 genomes]
rs12473300	0.85[ASN][1000 genomes]
rs12478262	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs12987806	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12995715	0.95[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs12996604	0.82[ASN][1000 genomes]
rs13020863	0.85[ASN][1000 genomes]
rs13409031	0.81[CHB][hapmap]
rs13422170	0.81[CHB][hapmap]
rs1568174	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs1807843	0.93[ASN][1000 genomes]
rs1810333	0.85[ASN][1000 genomes]
rs1878505	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs1966112	0.85[ASN][1000 genomes]
rs2034270	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2138791	0.81[CHB][hapmap]
rs2138793	0.85[ASN][1000 genomes]
rs2138794	0.82[ASN][1000 genomes]
rs2176414	0.85[ASN][1000 genomes]
rs2178678	0.81[CHB][hapmap]
rs2421888	0.85[ASN][1000 genomes]
rs2421892	0.81[CHB][hapmap]
rs2421954	0.92[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2422008	0.86[CHB][hapmap]
rs262496	0.85[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs262497	0.81[EUR][1000 genomes]
rs262498	0.90[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap]
rs2901581	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs35516797	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3754539	0.89[ASN][1000 genomes]
rs3754540	0.90[CEU][hapmap];0.90[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs4471880	0.84[ASN][1000 genomes]
rs4671061	0.81[CHB][hapmap]
rs4671501	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs4671502	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs4671504	0.85[ASN][1000 genomes]
rs4671506	0.84[ASN][1000 genomes]
rs4671507	0.85[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs4671511	0.94[EUR][1000 genomes]
rs62177834	0.93[ASN][1000 genomes]
rs6546003	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs6731136	0.81[CHB][hapmap]
rs6735907	0.86[CHB][hapmap]
rs6737621	0.95[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs6745644	0.85[ASN][1000 genomes]
rs6756605	0.85[ASN][1000 genomes]
rs6756696	0.85[ASN][1000 genomes]
rs6756850	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6761544	0.80[ASN][1000 genomes]
rs7598973	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8179835	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9749863	0.80[ASN][1000 genomes]
rs9749870	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63666600-63726800	Weak transcription	Gastric	stomach
2	chr2:63688600-63727800	Weak transcription	Primary B cells from cord blood	blood
3	chr2:63688800-63723000	Weak transcription	Liver	Liver
4	chr2:63690600-63733000	Weak transcription	Dnd41	blood
5	chr2:63691000-63724400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr2:63691400-63728000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:63691600-63719800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr2:63698600-63726800	Weak transcription	Left Ventricle	heart
9	chr2:63698600-63733600	Weak transcription	Primary T cells from cord blood	blood
10	chr2:63702800-63719800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr2:63705000-63723600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr2:63705200-63721400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr2:63705200-63721400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr2:63705200-63724800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:63708400-63720400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:63709400-63724200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:63712200-63727600	Weak transcription	Fetal Heart	heart
18	chr2:63712400-63720200	Weak transcription	Adipose Nuclei	Adipose
19	chr2:63712400-63722200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr2:63714200-63719400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr2:63714200-63725000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr2:63714400-63720200	Weak transcription	Thymus	Thymus
23	chr2:63715400-63722200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr2:63715600-63727000	Weak transcription	Pancreas	Pancrea
25	chr2:63716800-63733400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr2:63717600-63718800	Weak transcription	Ovary	ovary
27	chr2:63717800-63718800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr2:63718000-63720600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr2:63718000-63729600	Weak transcription	Aorta	Aorta
30	chr2:63718600-63721400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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