Variant report

Variant	rs6756850
Chromosome Location	chr2:63759907-63759908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10171190	0.80[ASN][1000 genomes]
rs10200146	0.82[ASN][1000 genomes]
rs1022351	0.80[ASN][1000 genomes]
rs1033253	0.84[ASN][1000 genomes]
rs11125979	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11676682	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12104978	0.83[ASN][1000 genomes]
rs12987806	0.80[EUR][1000 genomes]
rs12995715	0.85[ASN][1000 genomes]
rs13409031	0.83[ASN][1000 genomes]
rs13422170	0.83[ASN][1000 genomes]
rs169035	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1878505	0.84[ASN][1000 genomes]
rs2028886	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2034270	0.91[EUR][1000 genomes]
rs2138791	0.81[ASN][1000 genomes]
rs2178678	0.83[ASN][1000 genomes]
rs2421890	0.80[ASN][1000 genomes]
rs2421891	0.82[ASN][1000 genomes]
rs2421892	0.82[ASN][1000 genomes]
rs2421954	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2422008	0.93[ASN][1000 genomes]
rs262496	0.81[ASN][1000 genomes]
rs262497	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs262498	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs262499	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs262500	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35516797	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3754540	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4671061	0.83[ASN][1000 genomes]
rs4671511	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6731136	0.82[ASN][1000 genomes]
rs6735907	0.92[ASN][1000 genomes]
rs6737621	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7598973	0.80[ASN][1000 genomes]
rs8179835	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv960963	chr2:63741610-63765229	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63758400-63761600	Weak transcription	Gastric	stomach

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