Variant report

Variant	rs2034270
Chromosome Location	chr2:63692447-63692448
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10171190	0.81[CHB][hapmap]
rs10182889	0.84[ASN][1000 genomes]
rs10191163	0.90[ASN][1000 genomes]
rs10195862	0.80[ASN][1000 genomes]
rs10200146	0.82[CHB][hapmap]
rs10209490	0.81[CHB][hapmap]
rs1022351	0.81[CHB][hapmap]
rs1022352	0.85[ASN][1000 genomes]
rs1022353	0.81[CHB][hapmap]
rs1033253	0.81[EUR][1000 genomes]
rs11125968	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11125979	0.88[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs11676682	0.88[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs11687234	0.86[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11694795	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11694892	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12465146	0.85[ASN][1000 genomes]
rs12470121	0.85[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs12473110	0.83[ASN][1000 genomes]
rs12473300	0.85[ASN][1000 genomes]
rs12478262	0.85[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs12987806	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12995715	0.94[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12996604	0.82[ASN][1000 genomes]
rs13020863	0.85[ASN][1000 genomes]
rs13409031	0.81[CHB][hapmap]
rs13422170	0.81[CHB][hapmap]
rs1568174	0.86[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs169035	0.81[EUR][1000 genomes]
rs1807843	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1810333	0.85[ASN][1000 genomes]
rs1878505	0.88[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs1966112	0.85[ASN][1000 genomes]
rs2028886	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2138791	0.81[CHB][hapmap]
rs2138793	0.84[ASN][1000 genomes]
rs2138794	0.82[ASN][1000 genomes]
rs2176414	0.84[ASN][1000 genomes]
rs2178678	0.81[CHB][hapmap]
rs2421888	0.84[ASN][1000 genomes]
rs2421891	0.81[CHB][hapmap]
rs2421892	0.81[CHB][hapmap]
rs2421954	0.88[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes]
rs2422008	0.86[CHB][hapmap]
rs262496	0.84[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs262497	0.83[EUR][1000 genomes]
rs262498	0.88[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs262499	0.82[EUR][1000 genomes]
rs262500	0.82[EUR][1000 genomes]
rs2901581	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs35516797	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3754539	0.90[ASN][1000 genomes]
rs3754540	0.88[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs4471880	0.83[ASN][1000 genomes]
rs4671061	0.81[CHB][hapmap]
rs4671501	0.85[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs4671502	0.85[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs4671504	0.85[ASN][1000 genomes]
rs4671506	0.83[ASN][1000 genomes]
rs4671507	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs4671511	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62177834	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6546003	0.85[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs6731136	0.81[CHB][hapmap]
rs6735907	0.86[CHB][hapmap]
rs6737621	0.94[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs6745644	0.85[ASN][1000 genomes]
rs6756605	0.85[ASN][1000 genomes]
rs6756696	0.85[ASN][1000 genomes]
rs6756850	0.91[EUR][1000 genomes]
rs7598973	0.89[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap]
rs8179835	0.88[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs9749870	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv874235	chr2:63622470-63709708	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63662000-63698000	Weak transcription	Ovary	ovary
2	chr2:63666600-63726800	Weak transcription	Gastric	stomach
3	chr2:63673600-63697800	Weak transcription	Left Ventricle	heart
4	chr2:63674400-63693200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:63675800-63712000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:63680400-63698400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:63680600-63705800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:63681600-63717800	Weak transcription	Aorta	Aorta
9	chr2:63682400-63717600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:63683400-63712800	Weak transcription	Fetal Thymus	thymus
11	chr2:63684600-63698800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:63684800-63695400	Weak transcription	Brain Substantia Nigra	brain
13	chr2:63685800-63692800	Weak transcription	Fetal Heart	heart
14	chr2:63686000-63704600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr2:63686200-63698400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr2:63686600-63693000	Weak transcription	NH-A	brain
17	chr2:63686600-63706800	Weak transcription	Colon Smooth Muscle	Colon
18	chr2:63687000-63693200	Weak transcription	Brain Angular Gyrus	brain
19	chr2:63687400-63701000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr2:63687600-63713200	Weak transcription	Fetal Kidney	kidney
21	chr2:63688600-63696400	Weak transcription	Fetal Stomach	stomach
22	chr2:63688600-63704600	Weak transcription	Right Ventricle	heart
23	chr2:63688600-63705000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr2:63688600-63727800	Weak transcription	Primary B cells from cord blood	blood
25	chr2:63688800-63700600	Weak transcription	Brain Hippocampus Middle	brain
26	chr2:63688800-63701800	Weak transcription	Fetal Lung	lung
27	chr2:63688800-63711000	Weak transcription	Brain Anterior Caudate	brain
28	chr2:63688800-63723000	Weak transcription	Liver	Liver
29	chr2:63689000-63700600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr2:63689000-63712000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:63689200-63692800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr2:63689400-63692800	Weak transcription	Osteobl	bone
33	chr2:63689800-63695000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr2:63690200-63693000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:63690200-63699800	Weak transcription	Fetal Muscle Leg	muscle
36	chr2:63690200-63713600	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr2:63690400-63693200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr2:63690400-63704800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr2:63690600-63704600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr2:63690600-63733000	Weak transcription	Dnd41	blood
41	chr2:63691000-63724400	Weak transcription	Primary B cells from peripheral blood	blood
42	chr2:63691200-63697000	Weak transcription	Primary T cells from cord blood	blood
43	chr2:63691400-63728000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr2:63691600-63697200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr2:63691600-63719800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr2:63691800-63693000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr2:63691800-63693000	Weak transcription	Psoas Muscle	Psoas
48	chr2:63692000-63694600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr2:63692000-63694800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr2:63692000-63696000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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