Variant report

Variant	rs11677338
Chromosome Location	chr2:63948669-63948670
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10865344	0.88[EUR][1000 genomes]
rs11125981	0.80[AFR][1000 genomes]
rs11686956	0.87[AFR][1000 genomes]
rs11695421	0.85[AFR][1000 genomes]
rs12991311	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13006124	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17619717	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17619753	0.87[AFR][1000 genomes]
rs35474183	0.80[AFR][1000 genomes]
rs4318375	0.86[ASN][1000 genomes]
rs6726257	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6742187	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7597935	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63926800-63956600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:63940600-63950600	Weak transcription	Adipose Nuclei	Adipose
3	chr2:63943000-63956600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:63948400-63950800	Weak transcription	A549	lung
5	chr2:63948600-63950400	Weak transcription	Liver	Liver
6	chr2:63948600-63950400	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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