Variant report

Variant	rs11686956
Chromosome Location	chr2:63938708-63938709
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10183479	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10865344	0.80[AFR][1000 genomes]
rs11125981	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11558741	0.82[ASN][1000 genomes]
rs11674020	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11677338	0.87[AFR][1000 genomes]
rs11691987	0.80[ASN][1000 genomes]
rs11694253	0.98[ASN][1000 genomes]
rs11695421	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12713498	0.82[ASN][1000 genomes]
rs12991311	0.83[AFR][1000 genomes]
rs12996866	0.82[ASN][1000 genomes]
rs13006124	0.86[AFR][1000 genomes]
rs13431781	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1440002	0.80[ASN][1000 genomes]
rs17562177	0.80[ASN][1000 genomes]
rs17619717	0.90[AFR][1000 genomes]
rs17619753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2302808	0.80[ASN][1000 genomes]
rs35002211	0.80[ASN][1000 genomes]
rs35474183	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36033991	0.80[ASN][1000 genomes]
rs4538187	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4671071	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6546029	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6546030	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6546032	0.82[ASN][1000 genomes]
rs6546033	0.80[ASN][1000 genomes]
rs6546035	0.82[ASN][1000 genomes]
rs66980330	0.82[ASN][1000 genomes]
rs6715992	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6726257	0.82[AFR][1000 genomes]
rs67308158	0.82[ASN][1000 genomes]
rs6731508	0.82[ASN][1000 genomes]
rs6732746	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6742187	0.88[AFR][1000 genomes]
rs6755646	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67765474	0.80[ASN][1000 genomes]
rs7590399	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7597935	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63926800-63939800	Weak transcription	Adipose Nuclei	Adipose
2	chr2:63926800-63956600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:63936200-63944400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:63936600-63940200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr2:63937200-63940600	Enhancers	Psoas Muscle	Psoas
6	chr2:63937400-63939800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr2:63938000-63939600	Enhancers	Fetal Muscle Leg	muscle
8	chr2:63938400-63946400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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