Variant report

Variant	rs11884381
Chromosome Location	chr2:97594316-97594317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:97549380..97552349-chr2:97593261..97597032,3	K562	blood:
2	chr2:97593079..97595761-chr2:97610309..97612061,2	K562	blood:
3	chr2:97587758..97596829-chr2:97597446..97601811,11	K562	blood:
4	chr2:97587678..97590009-chr2:97592465..97595347,2	K562	blood:
5	chr2:97548965..97553137-chr2:97593651..97595519,4	MCF-7	breast:
6	chr2:97589310..97591841-chr2:97591978..97596020,4	MCF-7	breast:
7	chr2:97516728..97547486-chr2:97588377..97628331,265	MCF-7	breast:
8	chr2:97593591..97596299-chr2:97605457..97607301,3	K562	blood:
9	chr2:97557612..97562029-chr2:97591697..97596202,5	MCF-7	breast:
10	chr2:97592320..97594730-chr2:97595418..97597186,2	K562	blood:
11	chr2:97593459..97594414-chr2:97625887..97626638,2	MCF-7	breast:
12	chr2:97593138..97594730-chr2:97595667..97597186,2	K562	blood:
13	chr2:97583053..97586967-chr2:97591903..97594857,4	MCF-7	breast:
14	chr2:97540516..97542905-chr2:97593439..97596324,2	K562	blood:
15	chr2:97591692..97594867-chr2:97615830..97618948,3	MCF-7	breast:
16	chr2:97593614..97595477-chr2:97599029..97600763,2	MCF-7	breast:
17	chr2:97533478..97535318-chr2:97592914..97595812,2	K562	blood:
18	chr2:97481444..97483854-chr2:97592438..97595034,2	MCF-7	breast:
19	chr2:97573759..97576397-chr2:97592286..97595872,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168754	Chromatin interaction
ENSG00000213337	Chromatin interaction
ENSG00000168758	Chromatin interaction
ENSG00000168763	Chromatin interaction
ENSG00000163126	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57169069	1.00[AMR][1000 genomes]
rs61073402	1.00[AMR][1000 genomes]
rs72942934	1.00[AMR][1000 genomes]
rs72942936	1.00[AMR][1000 genomes]
rs72942943	1.00[AMR][1000 genomes]
rs72942949	1.00[AMR][1000 genomes]
rs72942950	1.00[AMR][1000 genomes]
rs72942951	1.00[AMR][1000 genomes]
rs7582688	1.00[AMR][1000 genomes]
rs7594281	1.00[AMR][1000 genomes]
rs7602647	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933671	chr2:96739308-97652262	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv1000780	chr2:96740430-97671395	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv535826	chr2:96740430-97671395	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv874677	chr2:96756547-97717345	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
5	nsv1001204	chr2:96766559-97728507	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
6	nsv535827	chr2:96766559-97728507	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
7	nsv874680	chr2:97309574-97678319	Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	nsv526313	chr2:97333492-97660619	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	nsv582497	chr2:97569305-97715154	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	esv2757819	chr2:97571109-98336507	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
11	esv2759077	chr2:97571109-98336507	Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
12	nsv1001432	chr2:97591069-97671395	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:97589800-97595200	Enhancers	Fetal Brain Male	brain
2	chr2:97592000-97594600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:97592200-97595800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:97592400-97594600	Enhancers	Placenta	Placenta
5	chr2:97592600-97594400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr2:97592600-97594600	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr2:97592800-97594400	Flanking Active TSS	Brain Hippocampus Middle	brain
8	chr2:97592800-97594400	Flanking Active TSS	Colon Smooth Muscle	Colon
9	chr2:97592800-97594600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr2:97592800-97594800	Enhancers	Esophagus	oesophagus
11	chr2:97592800-97595200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:97593000-97594400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:97593000-97594400	Enhancers	Left Ventricle	heart
14	chr2:97593000-97594600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr2:97593200-97594400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:97593200-97594400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:97593200-97594400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:97593200-97594400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr2:97593200-97594400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr2:97593200-97594400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr2:97593200-97594600	Flanking Active TSS	K562	blood
22	chr2:97593200-97594600	Flanking Active TSS	Osteobl	bone
23	chr2:97593200-97594800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:97593400-97594400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:97593400-97594400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr2:97593400-97594400	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
27	chr2:97593400-97594400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr2:97593400-97594400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr2:97593400-97594400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
30	chr2:97593400-97594400	Flanking Active TSS	HSMMtube	muscle
31	chr2:97593400-97594600	Flanking Active TSS	Rectal Smooth Muscle	rectum
32	chr2:97593600-97594400	Flanking Active TSS	Brain Angular Gyrus	brain
33	chr2:97593600-97594400	Flanking Active TSS	Fetal Heart	heart
34	chr2:97593600-97594400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
35	chr2:97593600-97594400	Bivalent Enhancer	Fetal Thymus	thymus
36	chr2:97593600-97594800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr2:97593600-97596800	Weak transcription	Brain Germinal Matrix	brain
38	chr2:97593600-97599400	Weak transcription	Gastric	stomach
39	chr2:97593800-97597800	Weak transcription	Pancreas	Pancrea
40	chr2:97593800-97599200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr2:97594000-97594400	Enhancers	Fetal Brain Female	brain
42	chr2:97594000-97594400	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr2:97594000-97594600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
44	chr2:97594000-97594600	Enhancers	Right Ventricle	heart
45	chr2:97594000-97595200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr2:97594000-97595200	Bivalent Enhancer	Fetal Stomach	stomach
47	chr2:97594000-97597800	Weak transcription	Right Atrium	heart
48	chr2:97594000-97610200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr2:97594200-97594400	Enhancers	Aorta	Aorta
50	chr2:97594200-97594400	Enhancers	Brain Substantia Nigra	brain

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