Variant report

Variant	rs72942950
Chromosome Location	chr2:97593438-97593439
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:97549380..97552349-chr2:97593261..97597032,3	K562	blood:
2	chr2:97593079..97595761-chr2:97610309..97612061,2	K562	blood:
3	chr2:97591274..97594233-chr2:97611259..97613898,3	MCF-7	breast:
4	chr2:97591538..97593644-chr2:97602591..97604574,2	MCF-7	breast:
5	chr2:97587758..97596829-chr2:97597446..97601811,11	K562	blood:
6	chr2:97587678..97590009-chr2:97592465..97595347,2	K562	blood:
7	chr2:97589310..97591841-chr2:97591978..97596020,4	MCF-7	breast:
8	chr2:97516728..97547486-chr2:97588377..97628331,265	MCF-7	breast:
9	chr2:97557612..97562029-chr2:97591697..97596202,5	MCF-7	breast:
10	chr2:97528035..97529559-chr2:97591357..97594257,2	K562	blood:
11	chr2:97592320..97594730-chr2:97595418..97597186,2	K562	blood:
12	chr2:97593138..97594730-chr2:97595667..97597186,2	K562	blood:
13	chr2:97583053..97586967-chr2:97591903..97594857,4	MCF-7	breast:
14	chr2:97591692..97594867-chr2:97615830..97618948,3	MCF-7	breast:
15	chr2:97593280..97593975-chr2:97616667..97617312,2	MCF-7	breast:
16	chr2:97533478..97535318-chr2:97592914..97595812,2	K562	blood:
17	chr2:97481444..97483854-chr2:97592438..97595034,2	MCF-7	breast:
18	chr2:97573759..97576397-chr2:97592286..97595872,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168754	Chromatin interaction
ENSG00000163126	Chromatin interaction
ENSG00000168758	Chromatin interaction
ENSG00000213337	Chromatin interaction
ENSG00000168763	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11884381	1.00[AMR][1000 genomes]
rs57169069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61073402	1.00[AMR][1000 genomes]
rs72942934	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942951	1.00[AMR][1000 genomes]
rs7582688	1.00[AMR][1000 genomes]
rs7594281	1.00[AMR][1000 genomes]
rs7602647	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933671	chr2:96739308-97652262	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv1000780	chr2:96740430-97671395	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv535826	chr2:96740430-97671395	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv874677	chr2:96756547-97717345	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
5	nsv1001204	chr2:96766559-97728507	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
6	nsv535827	chr2:96766559-97728507	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
7	nsv874680	chr2:97309574-97678319	Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	nsv526313	chr2:97333492-97660619	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	nsv582497	chr2:97569305-97715154	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	esv2757819	chr2:97571109-98336507	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
11	esv2759077	chr2:97571109-98336507	Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
12	nsv1001432	chr2:97591069-97671395	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:97589400-97593800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:97589800-97595200	Enhancers	Fetal Brain Male	brain
3	chr2:97590600-97593600	Enhancers	Brain Angular Gyrus	brain
4	chr2:97592000-97593600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr2:97592000-97594600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:97592200-97593600	Enhancers	Brain Germinal Matrix	brain
7	chr2:97592200-97593800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:97592200-97595800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:97592400-97593600	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr2:97592400-97593800	Bivalent Enhancer	Fetal Stomach	stomach
11	chr2:97592400-97594200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr2:97592400-97594200	Flanking Active TSS	Brain Anterior Caudate	brain
13	chr2:97592400-97594600	Enhancers	Placenta	Placenta
14	chr2:97592600-97594400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr2:97592600-97594600	Flanking Active TSS	Stomach Smooth Muscle	stomach
16	chr2:97592800-97593600	Enhancers	Fetal Heart	heart
17	chr2:97592800-97594000	Enhancers	Colonic Mucosa	Colon
18	chr2:97592800-97594000	Bivalent Enhancer	Fetal Intestine Large	intestine
19	chr2:97592800-97594200	Bivalent Enhancer	Fetal Intestine Small	intestine
20	chr2:97592800-97594400	Flanking Active TSS	Brain Hippocampus Middle	brain
21	chr2:97592800-97594400	Flanking Active TSS	Colon Smooth Muscle	Colon
22	chr2:97592800-97594600	Enhancers	Placenta Amnion	Placenta Amnion
23	chr2:97592800-97594800	Enhancers	Esophagus	oesophagus
24	chr2:97592800-97595200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr2:97593000-97593600	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr2:97593000-97593600	Enhancers	Fetal Brain Female	brain
27	chr2:97593000-97593600	Enhancers	Right Ventricle	heart
28	chr2:97593000-97593600	Bivalent Enhancer	NHDF-Ad	bronchial
29	chr2:97593000-97593800	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
30	chr2:97593000-97594000	Enhancers	Right Atrium	heart
31	chr2:97593000-97594400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr2:97593000-97594400	Enhancers	Left Ventricle	heart
33	chr2:97593000-97594600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr2:97593200-97593600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr2:97593200-97593600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr2:97593200-97593600	Enhancers	Fetal Lung	lung
37	chr2:97593200-97593600	Enhancers	Fetal Thymus	thymus
38	chr2:97593200-97593600	Enhancers	Gastric	stomach
39	chr2:97593200-97593600	Flanking Active TSS	HMEC	breast
40	chr2:97593200-97593600	Flanking Bivalent TSS/Enh	NHEK	skin
41	chr2:97593200-97593800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
42	chr2:97593200-97594000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
43	chr2:97593200-97594000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr2:97593200-97594000	Enhancers	Lung	lung
45	chr2:97593200-97594000	Enhancers	Psoas Muscle	Psoas
46	chr2:97593200-97594200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr2:97593200-97594200	Flanking Active TSS	Brain Cingulate Gyrus	brain
48	chr2:97593200-97594200	Flanking Active TSS	Brain Substantia Nigra	brain
49	chr2:97593200-97594400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr2:97593200-97594400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links