Variant report

Variant	rs118855
Chromosome Location	chr6:25551882-25551883
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25545037..25548609-chr6:25549675..25554265,5	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1206523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212934	0.84[CHB][hapmap];0.96[JPT][hapmap];0.89[ASN][1000 genomes]
rs214048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214053	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs214054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs214056	0.96[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs214057	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs214058	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs214059	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214060	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214065	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs368638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3804123	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs394201	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs441460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs452447	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs454095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs530145	0.89[ASN][1000 genomes]
rs6913974	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9379771	0.96[JPT][hapmap]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25471600-25597200	Weak transcription	Gastric	stomach
2	chr6:25514200-25558400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:25516200-25556800	Weak transcription	Pancreas	Pancrea
4	chr6:25516400-25556800	Weak transcription	Fetal Stomach	stomach
5	chr6:25516800-25606400	Weak transcription	Lung	lung
6	chr6:25519800-25556800	Weak transcription	Ovary	ovary
7	chr6:25522400-25588600	Weak transcription	HMEC	breast
8	chr6:25523000-25577200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:25530800-25584200	Weak transcription	Fetal Intestine Small	intestine
10	chr6:25538600-25563600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:25538600-25592800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:25539000-25561200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:25539200-25582000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:25539600-25556800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:25539600-25565200	Weak transcription	Aorta	Aorta
16	chr6:25539800-25558200	Weak transcription	Thymus	Thymus
17	chr6:25540600-25580200	Weak transcription	Fetal Thymus	thymus
18	chr6:25540800-25556800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:25541200-25553400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:25541400-25558600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:25541400-25576200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:25541600-25584400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:25541600-25612000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:25541800-25558400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:25542400-25563600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:25543600-25555600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:25543800-25562000	Weak transcription	Adipose Nuclei	Adipose
28	chr6:25544000-25593600	Weak transcription	Fetal Lung	lung
29	chr6:25544600-25565000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:25547200-25600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:25548800-25557000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr6:25551400-25555200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:25551400-25559200	Weak transcription	Primary T cells from cord blood	blood
34	chr6:25551400-25565400	Weak transcription	Fetal Intestine Large	intestine
35	chr6:25551800-25553600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links