The 2.0 version of rSNPBase

Variant report

Variant rs11885522
Chromosome Location chr2:73331636-73331637
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:73315600-73338000 Weak transcription Primary T helper cells fromperipheralblood blood
2 chr2:73316200-73338400 Weak transcription Brain Germinal Matrix brain
3 chr2:73316400-73334400 Weak transcription Fetal Brain Female brain
4 chr2:73316400-73335000 Weak transcription Brain Substantia Nigra brain
5 chr2:73318400-73331800 Weak transcription Colon Smooth Muscle Colon
6 chr2:73318600-73334400 Weak transcription HMEC breast
7 chr2:73320200-73332200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr2:73320600-73332800 Weak transcription Esophagus oesophagus
9 chr2:73320800-73332800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr2:73320800-73334400 Weak transcription Aorta Aorta
11 chr2:73321600-73332800 Weak transcription Fetal Muscle Leg muscle
12 chr2:73322400-73334600 Weak transcription Psoas Muscle Psoas
13 chr2:73326800-73332000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr2:73327000-73334400 Strong transcription Fetal Stomach stomach
15 chr2:73327000-73338800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr2:73328200-73332800 Enhancers Spleen Spleen
17 chr2:73329000-73331800 Strong transcription HepG2 liver
18 chr2:73329000-73333000 Weak transcription NHEK skin
19 chr2:73329000-73334800 Enhancers Skeletal Muscle Female skeletal muscle
20 chr2:73329400-73332200 Weak transcription NHDF-Ad bronchial
21 chr2:73329400-73332800 Weak transcription HSMMtube muscle
22 chr2:73329400-73338200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr2:73329600-73331800 Enhancers Primary T regulatory cells fromperipheralblood blood
24 chr2:73329600-73337600 Weak transcription iPS-15b Cell Line embryonic stem cell
25 chr2:73329800-73334200 Weak transcription Brain Hippocampus Middle brain
26 chr2:73329800-73334400 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
27 chr2:73329800-73337800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr2:73330000-73332600 Weak transcription HSMM muscle
29 chr2:73330200-73334400 Weak transcription H1 Cell Line embryonic stem cell
30 chr2:73330400-73332000 Weak transcription Fetal Heart heart
31 chr2:73330400-73332800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
32 chr2:73330400-73333400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
33 chr2:73330400-73337400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr2:73330400-73337400 Weak transcription Fetal Lung lung
35 chr2:73330600-73331800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr2:73330600-73332200 Enhancers Primary T helper 17 cells PMA-I stimulated --
37 chr2:73330600-73332800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr2:73330600-73332800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr2:73330600-73332800 Weak transcription Right Ventricle heart
40 chr2:73330600-73332800 Weak transcription NHLF lung
41 chr2:73330600-73333200 Weak transcription Colonic Mucosa Colon
42 chr2:73330600-73333600 Weak transcription Fetal Muscle Trunk muscle
43 chr2:73330600-73333800 Weak transcription Adipose Nuclei Adipose
44 chr2:73330600-73334000 Weak transcription Right Atrium heart
45 chr2:73330600-73334200 Weak transcription Placenta Amnion Placenta Amnion
46 chr2:73330600-73334200 Weak transcription Stomach Mucosa stomach
47 chr2:73330600-73334400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr2:73330600-73334400 Weak transcription Duodenum Mucosa Duodenum
49 chr2:73330600-73334600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr2:73330600-73337800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015