Variant report

Variant	rs11888113
Chromosome Location	chr2:167748213-167748214
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10201897	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12473079	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12473081	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12478429	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1355415	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2063437	1.00[YRI][hapmap]
rs4569494	1.00[YRI][hapmap]
rs4667527	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4667937	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72882711	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566782	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7580842	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7595556	0.87[AMR][1000 genomes]
rs7595607	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9679716	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167746200-167748400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:167746200-167748800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:167747200-167749200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:167747400-167748600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:167747600-167749000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:167747600-167749000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:167748000-167748800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:167748200-167749000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr2:167748200-167749000	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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