Variant report

Variant	rs9679716
Chromosome Location	chr2:167744735-167744736
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr2:167744687-167745012	HepG2	liver:	n/a	chr2:167744841-167744857 chr2:167744844-167744859 chr2:167744839-167744859 chr2:167744842-167744856
2	MAFF	chr2:167744722-167745000	HepG2	liver:	n/a	chr2:167744843-167744861 chr2:167744842-167744856

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:167744735-167744785	GM06990	blood:	n/a
2	chr2:167744735-167744785	ProgFib	skin:	n/a
3	chr2:167744735-167744785	HepG2	liver:	n/a
4	chr2:167744735-167744785	PrEC	prostate:	n/a
5	chr2:167744735-167744785	AG09309	skin:	n/a
6	chr2:167744735-167744785	AoSMC	blood vessel:	n/a
7	chr2:167744735-167744785	MCF-7	breast:	n/a
8	chr2:167744735-167744785	A549	lung:	n/a
9	chr2:167744735-167744785	HRE	kidney:	n/a
10	chr2:167744735-167744785	NHDF-neo	bronchial:	n/a
11	chr2:167744735-167744785	SK-N-SH	brain:	n/a
12	chr2:167744735-167744785	HPAEpiC	pulmonary alveolar:	n/a
13	chr2:167744735-167744785	HCT-116	colon:	n/a
14	chr2:167744735-167744785	Caco-2	colon:	n/a
15	chr2:167744735-167744785	PFSK-1	brain:	n/a
16	chr2:167744735-167744785	GM19239	blood:	n/a
17	chr2:167744735-167744785	K562	blood:	n/a
18	chr2:167744735-167744785	ovcar-3	ovarian:	n/a
19	chr2:167744735-167744785	NB4	blood:	n/a
20	chr2:167744735-167744785	IMR90	lung:	fetal
21	chr2:167744735-167744785	GM12878	blood:	n/a
22	chr2:167744735-167744785	AG09319	gingival:	n/a
23	chr2:167744735-167744785	RPTEC	kidney:	n/a
24	chr2:167744735-167744785	MCF10A-Er-Src	breast:	n/a
25	chr2:167744735-167744785	Hepatocyte	liver:	n/a
26	chr2:167744735-167744785	HUVEC	blood vessel:	n/a
27	chr2:167744735-167744785	HEK293	kidney:	embryo
28	chr2:167744735-167744785	Hela-S3	cervix:	n/a
29	chr2:167744735-167744785	HIPEpiC	eye:	n/a
30	chr2:167744735-167744785	AG04450	lung:	fetal
31	chr2:167744735-167744785	HCM	heart:	n/a
32	chr2:167744735-167744785	GM12892	blood:	n/a
33	chr2:167744735-167744785	GM12891	blood:	n/a
34	chr2:167744735-167744785	SKMC	muscle:	n/a
35	chr2:167744735-167744785	NHBE	bronchial:	n/a
36	chr2:167744735-167744785	HNPCEpiC	eye:	n/a
37	chr2:167744735-167744785	SAEC	small airway:	n/a
38	chr2:167744735-167744785	ECC-1	luminal epithelium:	n/a
39	chr2:167744735-167744785	HL-60	blood:	n/a
40	chr2:167744735-167744785	SK-N-MC	brain:	n/a
41	chr2:167744735-167744785	AG10803	skin:	n/a
42	chr2:167744735-167744785	SK-N-SH_RA	brain:	n/a
43	chr2:167744735-167744785	BJ	skin:	n/a
44	chr2:167744735-167744785	NT2-D1	testis:	n/a
45	chr2:167744735-167744785	HEEpiC	esophagus:	n/a
46	chr2:167744735-167744785	HCPEpiC	choroid plexus:	n/a
47	chr2:167744735-167744785	T-47D	breast:	n/a
48	chr2:167744735-167744785	PANC-1	pancreas:	n/a
49	chr2:167744735-167744785	AG04449	skin:	fetal
50	chr2:167744735-167744785	HMEC	breast:	n/a

No data

Variant related genes	Relation type
XIRP2	TF binding region
XIRP2	CpG island

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10201897	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11888113	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12473079	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12473081	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12478429	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1355415	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4667527	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4667937	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72882711	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7566782	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7580842	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7595607	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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