Variant report
| Variant | rs11888460 |
|---|---|
| Chromosome Location | chr2:141737417-141737418 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:141736437..141738156-chr2:141740284..141742486,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10496864 | 0.87[EUR][1000 genomes] |
| rs12471645 | 0.97[EUR][1000 genomes] |
| rs12471842 | 0.82[EUR][1000 genomes] |
| rs12475929 | 0.89[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs12475930 | 0.85[EUR][1000 genomes] |
| rs12622921 | 0.89[EUR][1000 genomes] |
| rs12623323 | 0.86[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs12624219 | 1.00[CEU][hapmap];0.90[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.97[EUR][1000 genomes] |
| rs16845115 | 1.00[CEU][hapmap];0.90[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.97[EUR][1000 genomes] |
| rs17521615 | 0.85[MEX][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs2091300 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2380918 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs34168519 | 0.87[EUR][1000 genomes] |
| rs3921277 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs56925193 | 0.89[EUR][1000 genomes] |
| rs6744686 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs716000 | 0.80[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs7609294 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv583198 | chr2:141510791-142150620 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1003008 | chr2:141518795-141763505 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875208 | chr2:141657878-141795620 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1014208 | chr2:141707558-141790148 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv817518 | chr2:141714174-142287302 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
