Variant report

Variant	rs11891966
Chromosome Location	chr2:167814455-167814456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11900561	1.00[AMR][1000 genomes]
rs11902995	1.00[YRI][hapmap]
rs16852636	1.00[AMR][1000 genomes]
rs16852845	1.00[AMR][1000 genomes]
rs16853010	1.00[AMR][1000 genomes]
rs59422965	1.00[AMR][1000 genomes]
rs73015964	1.00[AMR][1000 genomes]
rs73015969	1.00[AMR][1000 genomes]
rs73969928	1.00[AMR][1000 genomes]
rs73970085	1.00[AMR][1000 genomes]
rs73973428	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167813200-167815200	Enhancers	Fetal Intestine Small	intestine
2	chr2:167813800-167815000	Enhancers	Primary T cells from cord blood	blood
3	chr2:167814000-167814600	Enhancers	Fetal Intestine Large	intestine
4	chr2:167814000-167814800	Enhancers	Primary hematopoietic stem cells	blood
5	chr2:167814000-167814800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr2:167814000-167814800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:167814200-167814600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:167814200-167814600	Enhancers	Stomach Mucosa	stomach
9	chr2:167814200-167814600	Enhancers	HepG2	liver
10	chr2:167814200-167815000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:167814200-167815000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:167814200-167815200	Enhancers	Fetal Kidney	kidney
13	chr2:167814200-167817800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr2:167814200-167818000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr2:167814200-167818200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr2:167814400-167814800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:167814400-167814800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr2:167814400-167814800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr2:167814400-167815000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr2:167814400-167815400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr2:167814400-167818000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr2:167814400-167818000	Enhancers	Cortex derived primary cultured neurospheres	brain

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