Variant report

Variant	rs16853010
Chromosome Location	chr2:167996435-167996436
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11891966	1.00[AMR][1000 genomes]
rs16852845	1.00[AMR][1000 genomes]
rs16853183	1.00[AMR][1000 genomes]
rs73015964	1.00[AMR][1000 genomes]
rs73015969	1.00[AMR][1000 genomes]
rs7595273	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167989200-167998600	Weak transcription	Left Ventricle	heart
2	chr2:167990400-167996600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:167991600-167997000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:167992000-167996800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:167992200-167996800	Weak transcription	HSMMtube	muscle
6	chr2:167992200-167999800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:167992400-167996600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:167992600-167996800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:167992600-167996800	Weak transcription	NH-A	brain
10	chr2:167992600-167996800	Weak transcription	Osteobl	bone
11	chr2:167992600-167997200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:167993400-167996800	Weak transcription	HUVEC	blood vessel
13	chr2:167993400-167997000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:167993600-167997200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:167993800-167996600	Weak transcription	HSMM	muscle
16	chr2:167993800-167996800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr2:167993800-167997000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:167993800-167997000	Weak transcription	Psoas Muscle	Psoas
19	chr2:167993800-167999800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr2:167994200-167996800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr2:167994200-167996800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr2:167994400-167996800	Weak transcription	NHDF-Ad	bronchial
23	chr2:167995000-167999400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:167995000-167999600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr2:167995200-167996800	Weak transcription	NHLF	lung
26	chr2:167995600-167996600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:167996000-167997000	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr2:167996200-167998200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:167996200-167998400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr2:167996200-167998600	Enhancers	HMEC	breast
31	chr2:167996200-168001400	Enhancers	Fetal Heart	heart
32	chr2:167996200-168001400	Enhancers	Skeletal Muscle Female	skeletal muscle

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