Variant report

Variant	rs11892044
Chromosome Location	chr2:181696926-181696927
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11899268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13035717	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6740504	0.85[EUR][1000 genomes]
rs73974608	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7609144	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834475	chr2:181537463-181724891	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3460371	chr2:181694965-181698445	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv821835	chr2:181695124-181704766	Active TSS Enhancers	lncRNA	n/a	inside rSNPs	diseases
4	esv3460373	chr2:181695507-181698445	Inactive region	lncRNA	n/a	inside rSNPs	diseases
5	esv3460372	chr2:181695507-181700205	Inactive region	lncRNA	n/a	inside rSNPs	diseases
6	esv3364161	chr2:181696407-181699505	Inactive region	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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