Variant report

Variant	rs11893024
Chromosome Location	chr2:186610585-186610586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1010838	0.83[JPT][hapmap]
rs1010839	0.89[CHD][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap];0.80[ASN][1000 genomes]
rs1016410	1.00[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs10165206	0.81[ASN][1000 genomes]
rs10173630	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10173807	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10188205	0.86[JPT][hapmap]
rs10192219	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1019429	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs10490390	0.82[JPT][hapmap]
rs10490391	0.83[JPT][hapmap]
rs10490392	0.83[JPT][hapmap]
rs10803994	0.80[ASN][1000 genomes]
rs10931194	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs1116941	0.84[EUR][1000 genomes]
rs1119051	0.80[ASN][1000 genomes]
rs11883784	0.82[JPT][hapmap]
rs11884004	0.80[ASN][1000 genomes]
rs11884071	0.89[CHD][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap]
rs11894788	0.81[JPT][hapmap]
rs11903585	0.80[ASN][1000 genomes]
rs12053506	0.80[ASN][1000 genomes]
rs12328805	0.81[ASN][1000 genomes]
rs12474127	0.81[ASN][1000 genomes]
rs12475752	0.89[EUR][1000 genomes]
rs12615971	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs12618129	0.80[ASN][1000 genomes]
rs12988839	0.85[EUR][1000 genomes]
rs12991700	0.91[EUR][1000 genomes]
rs12998112	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs12999848	0.89[EUR][1000 genomes]
rs13002387	0.94[EUR][1000 genomes]
rs13003744	0.92[EUR][1000 genomes]
rs13026009	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13027342	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[EUR][1000 genomes]
rs13028347	0.81[EUR][1000 genomes]
rs13031291	0.81[ASN][1000 genomes]
rs13387605	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13411247	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13429564	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13432112	0.81[ASN][1000 genomes]
rs1468956	0.83[EUR][1000 genomes]
rs1544710	0.89[CHD][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.80[ASN][1000 genomes]
rs1544711	0.80[ASN][1000 genomes]
rs1544712	0.80[ASN][1000 genomes]
rs1544713	0.80[ASN][1000 genomes]
rs17228146	0.80[ASN][1000 genomes]
rs17228441	0.80[ASN][1000 genomes]
rs17228483	0.89[CHD][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap];0.80[ASN][1000 genomes]
rs17229201	0.86[CHD][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap]
rs17813736	0.80[ASN][1000 genomes]
rs17814545	0.83[JPT][hapmap]
rs1861896	0.89[EUR][1000 genomes]
rs1986166	0.89[CHD][hapmap];0.80[ASN][1000 genomes]
rs2216496	0.82[CHB][hapmap]
rs2255620	0.94[EUR][1000 genomes]
rs2287608	0.92[EUR][1000 genomes]
rs2370475	0.94[EUR][1000 genomes]
rs2370476	0.80[ASN][1000 genomes]
rs2887761	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs2887762	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs36035600	0.84[EUR][1000 genomes]
rs36114949	0.83[EUR][1000 genomes]
rs4233786	0.81[ASN][1000 genomes]
rs4311032	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4343435	0.81[ASN][1000 genomes]
rs4343438	0.84[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.87[MEX][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4430905	0.81[ASN][1000 genomes]
rs4500903	0.81[ASN][1000 genomes]
rs4510179	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4536613	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4547499	0.83[JPT][hapmap]
rs4571026	0.81[ASN][1000 genomes]
rs4619567	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4627526	0.81[ASN][1000 genomes]
rs4667051	0.89[EUR][1000 genomes]
rs4667052	0.82[CHB][hapmap]
rs4667056	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs55856163	0.80[ASN][1000 genomes]
rs58696152	0.94[EUR][1000 genomes]
rs62199142	0.93[EUR][1000 genomes]
rs62199145	0.92[EUR][1000 genomes]
rs6434137	0.82[EUR][1000 genomes]
rs6434141	0.89[CHD][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap];0.80[ASN][1000 genomes]
rs6705390	0.80[ASN][1000 genomes]
rs6705753	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs6718246	0.80[EUR][1000 genomes]
rs6725306	0.83[EUR][1000 genomes]
rs6732973	0.80[ASN][1000 genomes]
rs6733690	0.80[ASN][1000 genomes]
rs6733946	0.89[EUR][1000 genomes]
rs6735082	0.90[EUR][1000 genomes]
rs6745546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6746722	0.80[ASN][1000 genomes]
rs6759616	0.80[ASN][1000 genomes]
rs67690898	0.80[ASN][1000 genomes]
rs71407825	0.94[EUR][1000 genomes]
rs7424780	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs7564229	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7566166	0.80[ASN][1000 genomes]
rs7566901	0.85[JPT][hapmap]
rs7570524	0.82[CHD][hapmap]
rs7570827	0.80[ASN][1000 genomes]
rs7574766	0.80[ASN][1000 genomes]
rs7575226	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs7584776	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs7587203	0.80[ASN][1000 genomes]
rs7587685	0.80[ASN][1000 genomes]
rs7592890	0.89[CHD][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs7596200	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7602728	0.94[EUR][1000 genomes]
rs7605929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs763330	0.84[EUR][1000 genomes]
rs9646802	0.89[CHD][hapmap];0.83[JPT][hapmap];0.80[MEX][hapmap];0.80[ASN][1000 genomes]
rs984988	0.83[EUR][1000 genomes]
rs988937	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007052	chr2:186441382-186864390	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv584019	chr2:186445393-186866874	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1009118	chr2:186450293-186864390	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1008230	chr2:186474069-186818718	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv536076	chr2:186474069-186818718	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv584020	chr2:186475590-186661567	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv584021	chr2:186475590-186866841	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:186603800-186622600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:186606800-186632000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:186610200-186610800	Enhancers	Rectal Mucosa Donor 31	rectum

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