Variant report

Variant	rs7605929
Chromosome Location	chr2:186646192-186646193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1010838	0.83[JPT][hapmap]
rs1010839	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs1016410	0.92[CEU][hapmap];0.86[CHB][hapmap];0.94[EUR][1000 genomes]
rs10165206	0.83[ASN][1000 genomes]
rs10173630	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10173807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10188205	0.87[JPT][hapmap]
rs10192219	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10192246	0.81[ASN][1000 genomes]
rs1019429	0.83[JPT][hapmap]
rs10490390	0.83[JPT][hapmap]
rs10490391	0.83[JPT][hapmap]
rs10490392	0.83[JPT][hapmap]
rs10803994	0.80[ASN][1000 genomes]
rs10931194	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs1116941	0.82[EUR][1000 genomes]
rs1119051	0.80[ASN][1000 genomes]
rs11883784	0.83[JPT][hapmap]
rs11884004	0.80[ASN][1000 genomes]
rs11884071	0.83[JPT][hapmap]
rs11893024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11894788	0.82[JPT][hapmap]
rs11903585	0.80[ASN][1000 genomes]
rs12053506	0.80[ASN][1000 genomes]
rs12328805	0.83[ASN][1000 genomes]
rs12464794	0.81[ASN][1000 genomes]
rs12474127	0.83[ASN][1000 genomes]
rs12475752	0.88[EUR][1000 genomes]
rs12615971	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs12618129	0.80[ASN][1000 genomes]
rs12988839	0.84[EUR][1000 genomes]
rs12991700	0.90[EUR][1000 genomes]
rs12998112	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[EUR][1000 genomes]
rs12999848	0.88[EUR][1000 genomes]
rs13002387	0.93[EUR][1000 genomes]
rs13003744	0.93[EUR][1000 genomes]
rs13026009	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13027342	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs13028347	0.80[EUR][1000 genomes]
rs13031291	0.83[ASN][1000 genomes]
rs13387605	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13411247	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13429564	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13432112	0.83[ASN][1000 genomes]
rs1468956	0.82[EUR][1000 genomes]
rs1544710	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs1544711	0.80[ASN][1000 genomes]
rs1544712	0.80[ASN][1000 genomes]
rs1544713	0.80[ASN][1000 genomes]
rs17228146	0.80[ASN][1000 genomes]
rs17228441	0.80[ASN][1000 genomes]
rs17228483	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs17229201	0.83[JPT][hapmap]
rs17813736	0.80[ASN][1000 genomes]
rs17814545	0.83[JPT][hapmap]
rs1861896	0.88[EUR][1000 genomes]
rs1986166	0.80[ASN][1000 genomes]
rs2216496	0.83[CHB][hapmap]
rs2255620	0.93[EUR][1000 genomes]
rs2287608	0.93[EUR][1000 genomes]
rs2370475	0.93[EUR][1000 genomes]
rs2370476	0.80[ASN][1000 genomes]
rs2887761	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs2887762	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs36035600	0.83[EUR][1000 genomes]
rs36114949	0.82[EUR][1000 genomes]
rs4233786	0.83[ASN][1000 genomes]
rs4311032	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4343435	0.83[ASN][1000 genomes]
rs4343438	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4430905	0.83[ASN][1000 genomes]
rs4500903	0.83[ASN][1000 genomes]
rs4510179	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4536613	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4547499	0.83[JPT][hapmap]
rs4571026	0.83[ASN][1000 genomes]
rs4619567	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4627526	0.83[ASN][1000 genomes]
rs4667051	0.88[EUR][1000 genomes]
rs4667052	0.83[CHB][hapmap]
rs4667056	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs55856163	0.80[ASN][1000 genomes]
rs58696152	0.93[EUR][1000 genomes]
rs62199142	0.92[EUR][1000 genomes]
rs62199145	0.93[EUR][1000 genomes]
rs6434137	0.81[EUR][1000 genomes]
rs6434141	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs6705390	0.80[ASN][1000 genomes]
rs6705753	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs6725306	0.82[EUR][1000 genomes]
rs6732973	0.80[ASN][1000 genomes]
rs6733690	0.80[ASN][1000 genomes]
rs6733946	0.88[EUR][1000 genomes]
rs6735082	0.89[EUR][1000 genomes]
rs6745546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6746722	0.80[ASN][1000 genomes]
rs6759616	0.80[ASN][1000 genomes]
rs67690898	0.80[ASN][1000 genomes]
rs71407825	0.93[EUR][1000 genomes]
rs7424780	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs7564229	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7566166	0.80[ASN][1000 genomes]
rs7566901	0.85[JPT][hapmap]
rs7570827	0.80[ASN][1000 genomes]
rs7574766	0.80[ASN][1000 genomes]
rs7575226	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs7584776	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs7587203	0.80[ASN][1000 genomes]
rs7587685	0.80[ASN][1000 genomes]
rs7592890	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs7596200	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7602728	0.93[EUR][1000 genomes]
rs763330	0.83[EUR][1000 genomes]
rs9646802	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs984988	0.82[EUR][1000 genomes]
rs988937	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007052	chr2:186441382-186864390	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv584019	chr2:186445393-186866874	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1009118	chr2:186450293-186864390	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1008230	chr2:186474069-186818718	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv536076	chr2:186474069-186818718	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv584020	chr2:186475590-186661567	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv584021	chr2:186475590-186866841	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	esv1796337	chr2:186618494-186704965	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv1797599	chr2:186618494-186882821	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv817325	chr2:186625679-187200841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv962533	chr2:186639067-186649686	Active TSS Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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