Variant report

Variant	rs11893426
Chromosome Location	chr2:128226468-128226469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:128221686..128223814-chr2:128225539..128227819,2	MCF-7	breast:
2	chr2:128223739..128227371-chr2:128227403..128230155,4	K562	blood:
3	chr2:128223739..128227156-chr2:128228484..128231083,5	K562	blood:

Variant related genes	Relation type
ENSG00000202429	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11896327	0.87[AMR][1000 genomes]
rs11902626	0.87[AMR][1000 genomes]
rs61620809	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875014	chr2:128178415-128328375	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	esv3693423	chr2:128223875-128230794	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128206200-128237800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:128206800-128233600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:128208400-128238800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:128209000-128238000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:128209200-128237600	Weak transcription	Adipose Nuclei	Adipose
6	chr2:128210000-128227200	Weak transcription	Left Ventricle	heart
7	chr2:128210000-128237600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr2:128210200-128238000	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:128211400-128226600	Weak transcription	Ovary	ovary
10	chr2:128211600-128226800	Weak transcription	Brain Angular Gyrus	brain
11	chr2:128211600-128227000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:128211600-128237600	Weak transcription	Right Ventricle	heart
13	chr2:128212200-128226800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr2:128213000-128237600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr2:128213200-128237800	Weak transcription	Colonic Mucosa	Colon
16	chr2:128213400-128237800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr2:128213600-128226600	Weak transcription	Gastric	stomach
18	chr2:128213600-128237600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:128213600-128237800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr2:128213800-128238000	Weak transcription	Brain Germinal Matrix	brain
21	chr2:128215400-128226800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr2:128216200-128233600	Weak transcription	GM12878-XiMat	blood
23	chr2:128219800-128237600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:128220400-128239800	Weak transcription	Fetal Lung	lung
25	chr2:128221400-128226600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr2:128221600-128226600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr2:128221600-128226800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:128221600-128227000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr2:128221600-128229000	Weak transcription	HepG2	liver
30	chr2:128221600-128230200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:128221600-128237400	Weak transcription	HSMM	muscle
32	chr2:128221600-128237600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr2:128222200-128237800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr2:128222400-128237600	Weak transcription	Osteobl	bone
35	chr2:128222400-128237800	Weak transcription	Fetal Brain Female	brain
36	chr2:128222600-128226800	Weak transcription	Fetal Thymus	thymus
37	chr2:128222600-128237000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr2:128222600-128237200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr2:128222800-128230400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr2:128222800-128233400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr2:128222800-128237600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr2:128222800-128237800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr2:128222800-128239600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr2:128223000-128226600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr2:128223000-128226600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr2:128223000-128227000	Weak transcription	NHEK	skin
47	chr2:128223000-128227400	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr2:128223000-128237600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr2:128223200-128237000	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr2:128223200-128237000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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