Variant report

Variant	rs61620809
Chromosome Location	chr2:128243853-128243854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11893426	0.87[AMR][1000 genomes]
rs11896327	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11902626	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57539465	0.85[AMR][1000 genomes]
rs61354588	0.85[AMR][1000 genomes]
rs6753174	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875014	chr2:128178415-128328375	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128223600-128268800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:128226200-128244000	Weak transcription	Psoas Muscle	Psoas
3	chr2:128229000-128257000	Weak transcription	Stomach Mucosa	stomach
4	chr2:128235200-128270000	Strong transcription	Dnd41	blood
5	chr2:128237200-128244000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:128237400-128252400	Strong transcription	Fetal Muscle Trunk	muscle
7	chr2:128237400-128262400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:128237600-128244000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:128237600-128244600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:128237600-128244800	Strong transcription	Esophagus	oesophagus
11	chr2:128237600-128246600	Strong transcription	Fetal Stomach	stomach
12	chr2:128237600-128247200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:128237600-128247600	Strong transcription	Thymus	Thymus
14	chr2:128237600-128248000	Strong transcription	Fetal Intestine Large	intestine
15	chr2:128237600-128251400	Strong transcription	Rectal Smooth Muscle	rectum
16	chr2:128237600-128252200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:128237600-128252200	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr2:128237600-128255000	Strong transcription	Fetal Muscle Leg	muscle
19	chr2:128237600-128255200	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr2:128237600-128255400	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:128237600-128256000	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:128237600-128256200	Strong transcription	HepG2	liver
23	chr2:128237600-128263200	Strong transcription	Adipose Nuclei	Adipose
24	chr2:128237600-128263200	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr2:128237600-128263400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr2:128237600-128263400	Strong transcription	Fetal Thymus	thymus
27	chr2:128237800-128248600	Strong transcription	Colonic Mucosa	Colon
28	chr2:128237800-128252400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr2:128237800-128252400	Strong transcription	Left Ventricle	heart
30	chr2:128237800-128252400	Strong transcription	GM12878-XiMat	blood
31	chr2:128237800-128254400	Strong transcription	Brain Substantia Nigra	brain
32	chr2:128237800-128254600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:128237800-128255800	Strong transcription	Stomach Smooth Muscle	stomach
34	chr2:128237800-128263200	Strong transcription	Liver	Liver
35	chr2:128237800-128263200	Strong transcription	HUVEC	blood vessel
36	chr2:128237800-128263400	Strong transcription	Placenta	Placenta
37	chr2:128238400-128244000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr2:128238400-128255200	Strong transcription	K562	blood
39	chr2:128238400-128262400	Strong transcription	NH-A	brain
40	chr2:128238800-128248200	Strong transcription	Ovary	ovary
41	chr2:128238800-128260400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr2:128239000-128244000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr2:128239000-128246400	Strong transcription	Fetal Intestine Small	intestine
44	chr2:128239200-128263400	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr2:128239200-128264800	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr2:128239400-128248200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
47	chr2:128239400-128252400	Strong transcription	H9 Cell Line	embryonic stem cell
48	chr2:128239400-128255400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr2:128239400-128256200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr2:128239400-128264400	Strong transcription	HUES6 Cell Line	embryonic stem cell

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