Variant report

Variant	rs11894410
Chromosome Location	chr2:110964315-110964316
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:110961524-110964801	MCF10A-Er-Src	breast:	n/a	n/a
2	CTCF	chr2:110964300-110964450	HCPEpiC	choroid plexus:	n/a	n/a
3	POLR2A	chr2:110962481-110965067	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:110960357..110966320-chr2:110966517..110974106,19	K562	blood:

Variant related genes	Relation type
NPHP1	TF binding region
ENSG00000175701	Chromatin interaction

Extended variants
information (count: 312 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10167155	1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs10170120	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10170204	0.97[EUR][1000 genomes]
rs10171646	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10174448	0.87[EUR][1000 genomes]
rs10177822	0.87[EUR][1000 genomes]
rs10177824	0.87[EUR][1000 genomes]
rs10196865	0.87[EUR][1000 genomes]
rs10202266	0.93[AMR][1000 genomes]
rs10205807	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10211181	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1033017	0.87[EUR][1000 genomes]
rs11898910	0.94[ASW][hapmap];0.88[LWK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11904760	0.80[LWK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12477042	0.87[EUR][1000 genomes]
rs13416417	1.00[EUR][1000 genomes]
rs13421450	1.00[EUR][1000 genomes]
rs13429750	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17842656	0.87[EUR][1000 genomes]
rs2271242	1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs3789726	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs56357128	0.87[EUR][1000 genomes]
rs61730258	0.93[EUR][1000 genomes]
rs6711385	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6714985	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6716800	0.82[TSI][hapmap]
rs6744318	1.00[EUR][1000 genomes]
rs73954633	1.00[EUR][1000 genomes]
rs73954639	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73954641	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73954642	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326627	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9326628	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9326629	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9807986	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:277 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011456	chr2:110290958-110980402	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535861	chr2:110290958-110980402	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv491837	chr2:110381297-110964737	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv999552	chr2:110396395-110978224	Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv2751812	chr2:110457214-110980346	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1011653	chr2:110461521-110978224	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv874782	chr2:110463288-111334482	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
8	nsv1013901	chr2:110501500-110983669	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv1003103	chr2:110504334-111084885	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
10	nsv874787	chr2:110524250-111334482	Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
11	esv2757824	chr2:110693356-111123649	Strong transcription Genic enhancers Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
12	esv2759082	chr2:110693356-111123649	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
13	nsv532271	chr2:110694195-111209736	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
14	nsv582654	chr2:110695564-110983320	Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
15	nsv917407	chr2:110704031-110983669	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
16	nsv918119	chr2:110704031-111084885	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
17	nsv998768	chr2:110704032-110973315	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
18	nsv1010477	chr2:110704032-110983669	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
19	nsv1003206	chr2:110704032-111066273	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
20	nsv1010763	chr2:110704032-111084885	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
21	esv2763637	chr2:110704032-111169128	ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
22	nsv1010870	chr2:110704032-111400650	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
23	nsv874788	chr2:110706146-111334482	Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
24	nsv1011659	chr2:110710762-110983669	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
25	nsv998349	chr2:110710762-111084885	Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
26	nsv1005578	chr2:110717078-111084885	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
27	nsv874790	chr2:110727715-111334482	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
28	esv2830158	chr2:110727715-111419426	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
29	nsv994984	chr2:110732632-110964737	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
30	nsv869158	chr2:110732632-111334482	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
31	nsv915752	chr2:110732649-110964775	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
32	nsv874793	chr2:110732676-111334482	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
33	nsv1008374	chr2:110768230-111084885	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
34	nsv874794	chr2:110772440-111334482	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
35	nsv917668	chr2:110783035-110981045	Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
36	nsv918099	chr2:110783035-111369031	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
37	nsv529084	chr2:110783036-110964878	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	10 gene(s)	inside rSNPs	diseases
38	nsv1067566	chr2:110783236-110964737	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	10 gene(s)	inside rSNPs	diseases
39	nsv491906	chr2:110783236-110964737	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	10 gene(s)	inside rSNPs	diseases
40	nsv529799	chr2:110783236-111128847	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
41	nsv917042	chr2:110783251-110964775	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	10 gene(s)	inside rSNPs	diseases
42	nsv497911	chr2:110783251-111079065	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
43	nsv533709	chr2:110783258-111334482	Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
44	nsv874795	chr2:110790106-111334482	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
45	nsv582656	chr2:110796252-110983050	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
46	nsv874796	chr2:110796252-111334482	Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
47	nsv874798	chr2:110804164-111139869	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
48	nsv874797	chr2:110804164-111334482	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
49	nsv917939	chr2:110804382-110991361	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
50	nsv915581	chr2:110807572-111334482	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs11894410	LINC00116	cis	Esophagus Muscularis	GTEx
rs11894410	LINC00116	cis	Muscle Skeletal	GTEx
rs11894410	LINC00116	cis	Nerve Tibial	GTEx
rs11894410	LINC00116	cis	lung	GTEx
rs11894410	LINC00116	cis	Adipose Subcutaneous	GTEx
rs11894410	LINC00116	cis	Thyroid	GTEx
rs11894410	LINC00116	cis	Whole Blood	GTEx
rs11894410	LOC205251	cis	multi-tissue	Pritchard
rs11894410	LINC00116	cis	Esophagus Mucosa	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:110962800-110966800	Weak transcription	Spleen	Spleen
2	chr2:110962800-110968400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:110962800-110969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:110962800-110969400	Weak transcription	Gastric	stomach
5	chr2:110962800-110969400	Weak transcription	Small Intestine	intestine
6	chr2:110962800-110969600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:110963000-110965600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr2:110963000-110965600	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:110963000-110965800	Weak transcription	Placenta	Placenta
10	chr2:110963000-110966800	Weak transcription	Left Ventricle	heart
11	chr2:110963000-110966800	Weak transcription	Ovary	ovary
12	chr2:110963000-110966800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:110963000-110967000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr2:110963000-110967000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:110963000-110967000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:110963000-110967000	Weak transcription	Fetal Stomach	stomach
17	chr2:110963000-110967000	Weak transcription	Fetal Thymus	thymus
18	chr2:110963000-110967000	Weak transcription	Lung	lung
19	chr2:110963000-110967000	Weak transcription	Right Ventricle	heart
20	chr2:110963000-110967600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr2:110963000-110968600	Weak transcription	Pancreas	Pancrea
22	chr2:110963000-110968800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr2:110963000-110968800	Weak transcription	Colonic Mucosa	Colon
24	chr2:110963000-110969200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr2:110963000-110969200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr2:110963000-110969200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr2:110963000-110969400	Weak transcription	Aorta	Aorta
28	chr2:110963000-110969400	Weak transcription	Esophagus	oesophagus
29	chr2:110963200-110965800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr2:110963200-110966400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr2:110963200-110966400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr2:110963200-110966600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr2:110963200-110966600	Weak transcription	Primary B cells from cord blood	blood
34	chr2:110963200-110966600	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr2:110963200-110966600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr2:110963200-110966600	Weak transcription	Fetal Intestine Large	intestine
37	chr2:110963200-110966800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr2:110963200-110966800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr2:110963200-110966800	Weak transcription	Adipose Nuclei	Adipose
40	chr2:110963200-110966800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr2:110963200-110966800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr2:110963200-110966800	Weak transcription	Thymus	Thymus
43	chr2:110963200-110967000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr2:110963200-110967000	Weak transcription	Brain Anterior Caudate	brain
45	chr2:110963200-110967000	Weak transcription	Brain Germinal Matrix	brain
46	chr2:110963200-110967000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr2:110963200-110967000	Weak transcription	HSMM	muscle
48	chr2:110963200-110967200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr2:110963200-110967200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr2:110963200-110967200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links