Variant report

Variant	rs11894812
Chromosome Location	chr2:73034906-73034907
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:73034831..73036995-chr2:73042272..73044592,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10187814	0.90[AMR][1000 genomes]
rs10205532	0.90[AMR][1000 genomes]
rs11126380	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11883986	0.90[AMR][1000 genomes]
rs11892199	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11902280	0.90[AMR][1000 genomes]
rs12105464	0.89[AMR][1000 genomes]
rs13397183	0.90[AMR][1000 genomes]
rs13405937	0.90[AMR][1000 genomes]
rs13416510	0.90[AMR][1000 genomes]
rs28581818	0.90[AMR][1000 genomes]
rs7585242	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834259	chr2:72941118-73114106	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73016400-73035600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:73016600-73035800	Weak transcription	Left Ventricle	heart
3	chr2:73022400-73042200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:73023400-73035800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:73026600-73035200	Weak transcription	Primary T cells from cord blood	blood
6	chr2:73026800-73035000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr2:73028000-73035600	Weak transcription	Fetal Intestine Large	intestine
8	chr2:73030000-73035800	Weak transcription	Esophagus	oesophagus
9	chr2:73030600-73040800	Weak transcription	HSMMtube	muscle
10	chr2:73030800-73040800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:73030800-73040800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr2:73031400-73035600	Weak transcription	NHEK	skin
13	chr2:73031400-73038000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:73031600-73035800	Weak transcription	Brain Anterior Caudate	brain
15	chr2:73031600-73035800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr2:73031800-73035600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:73032200-73040200	Weak transcription	Brain Hippocampus Middle	brain
18	chr2:73032400-73036000	Weak transcription	Brain Angular Gyrus	brain
19	chr2:73032400-73040000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr2:73033800-73035800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:73034000-73049600	Weak transcription	Right Atrium	heart
22	chr2:73034200-73037200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:73034400-73036000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:73034400-73040600	Weak transcription	Fetal Heart	heart
25	chr2:73034400-73051600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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