Variant report

Variant	rs11902280
Chromosome Location	chr2:72948142-72948143
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10187814	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10188019	0.90[AMR][1000 genomes]
rs10195520	0.90[AMR][1000 genomes]
rs10205532	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs10469964	0.90[AMR][1000 genomes]
rs11126380	0.90[AMR][1000 genomes]
rs11883986	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11891034	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11892199	0.82[LWK][hapmap];0.90[AMR][1000 genomes]
rs11894812	0.90[AMR][1000 genomes]
rs13390314	0.90[AMR][1000 genomes]
rs13391151	0.90[AMR][1000 genomes]
rs13397183	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13399612	0.90[AMR][1000 genomes]
rs13405645	0.90[AMR][1000 genomes]
rs13405937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13416510	1.00[AMR][1000 genomes]
rs1911690	0.95[YRI][hapmap]
rs28581818	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6546784	0.90[AMR][1000 genomes]
rs6738020	0.90[AMR][1000 genomes]
rs7563870	0.90[AMR][1000 genomes]
rs7585242	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834259	chr2:72941118-73114106	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72905800-72984400	Weak transcription	Aorta	Aorta
2	chr2:72917000-72950000	Weak transcription	Brain Angular Gyrus	brain
3	chr2:72922400-72949800	Weak transcription	Fetal Brain Female	brain
4	chr2:72922400-72972000	Weak transcription	Right Ventricle	heart
5	chr2:72922400-72976200	Weak transcription	Psoas Muscle	Psoas
6	chr2:72922600-72951000	Weak transcription	Fetal Muscle Leg	muscle
7	chr2:72922800-72949600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:72923000-72972800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:72923000-73008600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:72923600-72958200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr2:72929000-72951200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr2:72937200-72974200	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:72937800-72978400	Weak transcription	Brain Germinal Matrix	brain
14	chr2:72938000-72949800	Weak transcription	HSMMtube	muscle
15	chr2:72938200-72949400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr2:72938200-72950200	Weak transcription	Stomach Mucosa	stomach
17	chr2:72938200-72950200	Weak transcription	HSMM	muscle
18	chr2:72938200-72987800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:72938600-72950800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr2:72939800-72949800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr2:72940600-72949400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr2:72940600-72959600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr2:72941400-72970000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr2:72941600-72949200	Weak transcription	Liver	Liver
25	chr2:72942000-72948800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr2:72942000-72950000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:72942400-72949200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:72943400-72949800	Weak transcription	NH-A	brain
29	chr2:72943400-72950000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr2:72943600-72949000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr2:72943600-72978800	Weak transcription	Primary T cells from cord blood	blood
32	chr2:72944600-72949800	Enhancers	Fetal Lung	lung
33	chr2:72945400-72949600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr2:72945400-72968000	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr2:72945600-72949800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr2:72945600-72977800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr2:72946000-72949200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr2:72946200-72949400	Weak transcription	NHDF-Ad	bronchial
39	chr2:72946400-72961200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr2:72946400-72974600	Weak transcription	Brain Substantia Nigra	brain
41	chr2:72946600-72950000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr2:72946600-72950200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr2:72946600-72969800	Weak transcription	Placenta	Placenta
44	chr2:72946600-72972800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr2:72946800-72949400	Weak transcription	NHLF	lung
46	chr2:72946800-72949600	Weak transcription	Colon Smooth Muscle	Colon
47	chr2:72946800-72949800	Weak transcription	Fetal Intestine Small	intestine
48	chr2:72946800-72949800	Weak transcription	HMEC	breast
49	chr2:72946800-72950000	Weak transcription	Fetal Stomach	stomach
50	chr2:72946800-72950200	Weak transcription	Fetal Intestine Large	intestine

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