Variant report

Variant	rs10469964
Chromosome Location	chr2:72911147-72911148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72909548..72911648-chr2:72914521..72916177,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10187814	0.90[AMR][1000 genomes]
rs10188019	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10195520	1.00[AMR][1000 genomes]
rs10205532	0.90[AMR][1000 genomes]
rs11883986	0.90[AMR][1000 genomes]
rs11902280	0.90[AMR][1000 genomes]
rs12105464	0.89[AMR][1000 genomes]
rs13390314	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13391151	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13397183	0.90[AMR][1000 genomes]
rs13399612	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13405645	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13405937	0.90[AMR][1000 genomes]
rs13416510	0.90[AMR][1000 genomes]
rs28581818	0.90[AMR][1000 genomes]
rs6546784	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6738020	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7563870	1.00[AMR][1000 genomes]
rs7585242	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72896800-72943000	Weak transcription	Primary T cells from cord blood	blood
2	chr2:72897000-72912600	Weak transcription	NHLF	lung
3	chr2:72900200-72911800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:72901600-72919200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:72902600-72913200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:72902600-72921200	Weak transcription	Adipose Nuclei	Adipose
7	chr2:72903600-72937400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:72903800-72921800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:72903800-72922200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:72904200-72916400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:72904200-72916600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:72904400-72913000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:72904400-72916400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:72904400-72922000	Weak transcription	NHDF-Ad	bronchial
15	chr2:72904400-72939000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:72904800-72916800	Weak transcription	NHEK	skin
17	chr2:72905600-72921400	Weak transcription	Placenta	Placenta
18	chr2:72905600-72922000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:72905600-72943200	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr2:72905800-72912400	Weak transcription	Brain Angular Gyrus	brain
21	chr2:72905800-72912400	Weak transcription	Ovary	ovary
22	chr2:72905800-72912600	Weak transcription	Fetal Lung	lung
23	chr2:72905800-72916800	Weak transcription	Psoas Muscle	Psoas
24	chr2:72905800-72921400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:72905800-72984400	Weak transcription	Aorta	Aorta
26	chr2:72908000-72916600	Weak transcription	Left Ventricle	heart
27	chr2:72909400-72912400	Weak transcription	Fetal Stomach	stomach
28	chr2:72909400-72921200	Weak transcription	A549	lung
29	chr2:72909600-72921200	Weak transcription	HepG2	liver
30	chr2:72910000-72921600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr2:72910200-72922000	Weak transcription	Lung	lung
32	chr2:72910400-72912800	Weak transcription	Fetal Heart	heart

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