Variant report

Variant	rs10188019
Chromosome Location	chr2:73053982-73053983
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:73053385..73054914-chr2:73067764..73069796,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10187814	0.90[AMR][1000 genomes]
rs10195520	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10205532	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10469964	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11883986	0.90[AMR][1000 genomes]
rs11902280	0.90[AMR][1000 genomes]
rs12105464	0.89[AMR][1000 genomes]
rs13390314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13391151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13397183	0.90[AMR][1000 genomes]
rs13399612	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13405645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13405937	0.90[AMR][1000 genomes]
rs13416510	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13426439	0.88[AFR][1000 genomes]
rs28581818	0.90[AMR][1000 genomes]
rs6546784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6738020	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7563870	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7585242	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834259	chr2:72941118-73114106	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73053200-73054800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:73053400-73054600	Enhancers	Placenta	Placenta
3	chr2:73053400-73054600	Weak transcription	HSMM	muscle
4	chr2:73053400-73054600	Weak transcription	NH-A	brain
5	chr2:73053400-73054800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr2:73053400-73055000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:73053400-73055000	Weak transcription	NHDF-Ad	bronchial
8	chr2:73053400-73055400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:73053400-73056200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:73053400-73056800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:73053400-73056800	Weak transcription	GM12878-XiMat	blood
12	chr2:73053400-73056800	Enhancers	HMEC	breast
13	chr2:73053600-73054400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:73053600-73054400	Weak transcription	Left Ventricle	heart
15	chr2:73053600-73054600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr2:73053600-73054600	Weak transcription	HSMMtube	muscle
17	chr2:73053600-73055000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:73053600-73055000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:73053600-73055000	Weak transcription	Fetal Muscle Leg	muscle
20	chr2:73053600-73055000	Weak transcription	Osteobl	bone
21	chr2:73053600-73055200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:73053600-73055200	Enhancers	Hela-S3	cervix
23	chr2:73053600-73055200	Weak transcription	HUVEC	blood vessel
24	chr2:73053600-73055400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr2:73053600-73055400	Enhancers	NHEK	skin
26	chr2:73053600-73056600	Weak transcription	Gastric	stomach
27	chr2:73053600-73056600	Enhancers	NHLF	lung
28	chr2:73053600-73057000	Weak transcription	Esophagus	oesophagus
29	chr2:73053600-73060000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr2:73053800-73054200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:73053800-73054600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr2:73053800-73055000	Weak transcription	Fetal Heart	heart
33	chr2:73053800-73055000	Weak transcription	A549	lung
34	chr2:73053800-73055200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr2:73053800-73055400	Weak transcription	HepG2	liver

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