Variant report

Variant	rs11895496
Chromosome Location	chr2:37444445-37444446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11894772	0.93[AFR][1000 genomes]
rs17020307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59263953	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60698646	0.93[AFR][1000 genomes]
rs72874094	0.87[AFR][1000 genomes]
rs72875709	0.93[AFR][1000 genomes]
rs72875717	0.93[AFR][1000 genomes]
rs72875729	0.90[AFR][1000 genomes]
rs72875740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72875743	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72875745	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72875750	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72875751	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72875755	0.84[AFR][1000 genomes]
rs72875758	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72875760	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7557416	0.93[AFR][1000 genomes]
rs7591816	0.93[AFR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37424400-37446400	Weak transcription	Small Intestine	intestine
2	chr2:37426600-37451400	Strong transcription	Fetal Thymus	thymus
3	chr2:37427800-37451400	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr2:37429000-37449200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr2:37429400-37449000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr2:37429800-37452600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr2:37431200-37450600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:37431200-37450600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:37431200-37452400	Strong transcription	Dnd41	blood
10	chr2:37431400-37450800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:37432400-37444600	Strong transcription	Placenta Amnion	Placenta Amnion
12	chr2:37433000-37451600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:37433200-37450600	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr2:37433800-37445800	Strong transcription	Placenta	Placenta
15	chr2:37433800-37447800	Weak transcription	Aorta	Aorta
16	chr2:37433800-37447800	Weak transcription	Gastric	stomach
17	chr2:37433800-37448000	Weak transcription	Pancreas	Pancrea
18	chr2:37433800-37453600	Weak transcription	Spleen	Spleen
19	chr2:37434000-37447600	Weak transcription	Right Ventricle	heart
20	chr2:37434200-37452400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr2:37435600-37444800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
22	chr2:37435600-37444800	Strong transcription	Colon Smooth Muscle	Colon
23	chr2:37436400-37444800	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr2:37436400-37446800	Strong transcription	K562	blood
25	chr2:37436600-37444800	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr2:37436600-37444800	Strong transcription	NH-A	brain
27	chr2:37436600-37450000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr2:37436600-37451400	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr2:37436800-37444600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr2:37436800-37444600	Strong transcription	Fetal Lung	lung
31	chr2:37436800-37444800	Strong transcription	Primary B cells from cord blood	blood
32	chr2:37436800-37444800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr2:37436800-37450400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr2:37436800-37451400	Strong transcription	Duodenum Mucosa	Duodenum
35	chr2:37436800-37452200	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr2:37436800-37456600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr2:37437000-37444600	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr2:37437000-37447000	Strong transcription	Primary hematopoietic stem cells	blood
39	chr2:37437000-37449200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr2:37437000-37453400	Weak transcription	Fetal Heart	heart
41	chr2:37437200-37444600	Strong transcription	HMEC	breast
42	chr2:37437200-37451400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:37437200-37452400	Strong transcription	Fetal Intestine Large	intestine
44	chr2:37437200-37456600	Weak transcription	Stomach Mucosa	stomach
45	chr2:37437400-37445000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr2:37437400-37450800	Strong transcription	Liver	Liver
47	chr2:37437400-37451200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr2:37437600-37451200	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr2:37437600-37451200	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr2:37437800-37444600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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