Variant report

Variant	rs72875750
Chromosome Location	chr2:37450894-37450895
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37442737..37444326-chr2:37450771..37453240,2	K562	blood:
2	chr2:37361901..37364742-chr2:37450449..37452546,2	K562	blood:
3	chr2:37437490..37439278-chr2:37450709..37453038,2	K562	blood:
4	chr2:37432901..37435417-chr2:37450449..37452931,2	K562	blood:
5	chr2:37447093..37450446-chr2:37450572..37453821,4	K562	blood:
6	chr2:37447083..37453537-chr2:37456497..37459782,8	MCF-7	breast:
7	chr2:37372592..37375030-chr2:37450307..37452149,2	K562	blood:

Variant related genes	Relation type
ENSG00000055332	Chromatin interaction
ENSG00000003509	Chromatin interaction
ENSG00000115816	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11894772	0.87[AFR][1000 genomes]
rs11895496	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17020307	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17020309	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28548299	0.89[EUR][1000 genomes]
rs59263953	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs60698646	0.87[AFR][1000 genomes]
rs72863107	1.00[EUR][1000 genomes]
rs72863111	1.00[EUR][1000 genomes]
rs72874094	0.80[AFR][1000 genomes]
rs72875709	0.87[AFR][1000 genomes]
rs72875717	0.87[AFR][1000 genomes]
rs72875729	0.84[AFR][1000 genomes]
rs72875740	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72875743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72875745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72875751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72875755	0.91[AFR][1000 genomes]
rs72875758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72875760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72875762	1.00[EUR][1000 genomes]
rs72875768	1.00[EUR][1000 genomes]
rs72875776	1.00[EUR][1000 genomes]
rs72875778	1.00[EUR][1000 genomes]
rs72875779	1.00[EUR][1000 genomes]
rs7557416	0.87[AFR][1000 genomes]
rs7591816	0.87[AFR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37426600-37451400	Strong transcription	Fetal Thymus	thymus
2	chr2:37427800-37451400	Strong transcription	Rectal Mucosa Donor 29	rectum
3	chr2:37429800-37452600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr2:37431200-37452400	Strong transcription	Dnd41	blood
5	chr2:37433000-37451600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:37433800-37453600	Weak transcription	Spleen	Spleen
7	chr2:37434200-37452400	Strong transcription	Primary B cells from peripheral blood	blood
8	chr2:37436600-37451400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr2:37436800-37451400	Strong transcription	Duodenum Mucosa	Duodenum
10	chr2:37436800-37452200	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr2:37436800-37456600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:37437000-37453400	Weak transcription	Fetal Heart	heart
13	chr2:37437200-37451400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:37437200-37452400	Strong transcription	Fetal Intestine Large	intestine
15	chr2:37437200-37456600	Weak transcription	Stomach Mucosa	stomach
16	chr2:37437400-37451200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:37437600-37451200	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr2:37437600-37451200	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr2:37437800-37451000	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr2:37437800-37451600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:37438000-37455200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:37438200-37451000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr2:37439600-37451400	Strong transcription	HepG2	liver
24	chr2:37439800-37456600	Weak transcription	Brain Substantia Nigra	brain
25	chr2:37440400-37455200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr2:37440800-37454000	Weak transcription	Esophagus	oesophagus
27	chr2:37441800-37451600	Strong transcription	Fetal Muscle Trunk	muscle
28	chr2:37442000-37451200	Strong transcription	Adipose Nuclei	Adipose
29	chr2:37442800-37451200	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr2:37442800-37456000	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr2:37443000-37452600	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr2:37443000-37456000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr2:37443400-37451000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr2:37443400-37451600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:37443400-37452000	Strong transcription	A549	lung
36	chr2:37443600-37453400	Weak transcription	Brain Angular Gyrus	brain
37	chr2:37445600-37451000	Strong transcription	Osteobl	bone
38	chr2:37445600-37451200	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr2:37445600-37451400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr2:37445600-37451400	Strong transcription	Fetal Muscle Leg	muscle
41	chr2:37445600-37452400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr2:37445800-37451000	Strong transcription	Thymus	Thymus
43	chr2:37445800-37451000	Strong transcription	NHDF-Ad	bronchial
44	chr2:37445800-37451400	Strong transcription	H9 Cell Line	embryonic stem cell
45	chr2:37445800-37451400	Strong transcription	Left Ventricle	heart
46	chr2:37445800-37451400	Strong transcription	Stomach Smooth Muscle	stomach
47	chr2:37446000-37451000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr2:37446000-37451200	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr2:37446200-37451000	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr2:37446200-37451200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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