Variant report

Variant	rs72875776
Chromosome Location	chr2:37463384-37463385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37461002..37463569-chr2:37509247..37510932,2	K562	blood:
2	chr2:37461691..37463577-chr2:37472190..37474788,2	K562	blood:
3	chr2:37455061..37456837-chr2:37463008..37464673,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000003509	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs28548299	0.89[EUR][1000 genomes]
rs55912911	0.96[AFR][1000 genomes]
rs56966464	0.88[AFR][1000 genomes]
rs58186361	0.80[AFR][1000 genomes]
rs72863107	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863134	0.92[AFR][1000 genomes]
rs72863147	0.88[AFR][1000 genomes]
rs72863156	0.80[AFR][1000 genomes]
rs72863189	0.80[AFR][1000 genomes]
rs72875750	1.00[EUR][1000 genomes]
rs72875751	1.00[EUR][1000 genomes]
rs72875758	1.00[EUR][1000 genomes]
rs72875760	1.00[EUR][1000 genomes]
rs72875762	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72875768	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72875778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72875779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37459800-37465000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr2:37460000-37463400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:37460000-37468200	Weak transcription	Psoas Muscle	Psoas
4	chr2:37460000-37468600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr2:37460000-37471200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr2:37460000-37474000	Weak transcription	Colonic Mucosa	Colon
7	chr2:37460000-37495600	Weak transcription	Small Intestine	intestine
8	chr2:37460000-37501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:37460200-37463800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:37460200-37464600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:37460200-37464600	Weak transcription	NHLF	lung
12	chr2:37460200-37465200	Weak transcription	Primary B cells from cord blood	blood
13	chr2:37460200-37466600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr2:37460200-37468400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:37460200-37468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
17	chr2:37460400-37463400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:37460400-37463400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr2:37460400-37463600	Weak transcription	Colon Smooth Muscle	Colon
20	chr2:37460400-37464000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr2:37460400-37464000	Weak transcription	Primary T cells from cord blood	blood
22	chr2:37460400-37464000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr2:37460400-37464400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr2:37460400-37464400	Weak transcription	Adipose Nuclei	Adipose
25	chr2:37460400-37464400	Weak transcription	Liver	Liver
26	chr2:37460400-37464400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr2:37460400-37464400	Weak transcription	Osteobl	bone
28	chr2:37460400-37464600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:37460400-37464600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:37460400-37464600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:37460400-37464600	Weak transcription	Brain Anterior Caudate	brain
32	chr2:37460400-37464600	Weak transcription	Fetal Lung	lung
33	chr2:37460400-37464600	Weak transcription	Placenta	Placenta
34	chr2:37460400-37464600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr2:37460400-37464600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr2:37460400-37464800	Weak transcription	Fetal Intestine Large	intestine
37	chr2:37460400-37465200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr2:37460400-37465200	Weak transcription	Fetal Brain Female	brain
39	chr2:37460400-37465400	Weak transcription	Lung	lung
40	chr2:37460400-37465600	Weak transcription	Left Ventricle	heart
41	chr2:37460400-37465800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr2:37460400-37466000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr2:37460400-37466200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr2:37460400-37466200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr2:37460400-37467200	Weak transcription	Esophagus	oesophagus
46	chr2:37460400-37467200	Weak transcription	Pancreas	Pancrea
47	chr2:37460400-37467400	Weak transcription	NHDF-Ad	bronchial
48	chr2:37460400-37468000	Weak transcription	HUVEC	blood vessel
49	chr2:37460400-37468400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr2:37460400-37468400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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