Variant report

Variant	rs11896638
Chromosome Location	chr2:185581713-185581714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10931151	0.86[YRI][hapmap]
rs11898003	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11898500	0.89[AFR][1000 genomes]
rs11899942	0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12104875	0.96[YRI][hapmap]
rs12105548	0.96[YRI][hapmap]
rs59102345	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59318193	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6434101	0.96[YRI][hapmap]
rs6731662	0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6755385	0.86[YRI][hapmap]
rs73978098	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73980326	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7579459	0.80[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links