Variant report

Variant	rs11896684
Chromosome Location	chr2:77014075-77014076
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10202468	1.00[EUR][1000 genomes]
rs10209686	1.00[EUR][1000 genomes]
rs11901875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13382600	1.00[EUR][1000 genomes]
rs13389599	1.00[EUR][1000 genomes]
rs13402128	1.00[EUR][1000 genomes]
rs13405495	1.00[EUR][1000 genomes]
rs13429829	1.00[EUR][1000 genomes]
rs59328315	1.00[EUR][1000 genomes]
rs60813730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62172099	0.89[AFR][1000 genomes]
rs6733240	1.00[EUR][1000 genomes]
rs72917793	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72919613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72919625	1.00[EUR][1000 genomes]
rs7595825	0.89[AMR][1000 genomes]
rs7595836	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv999822	chr2:76994539-77022762	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
3	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77009000-77039000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:77009400-77022600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:77009600-77038200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:77011400-77014600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:77012400-77014200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:77013000-77014400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:77013400-77014400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links