Variant report

Variant	rs13429829
Chromosome Location	chr2:76906096-76906097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10209803	1.00[EUR][1000 genomes]
rs11896684	1.00[EUR][1000 genomes]
rs11901875	1.00[EUR][1000 genomes]
rs13385215	1.00[EUR][1000 genomes]
rs13402128	1.00[EUR][1000 genomes]
rs13431330	1.00[EUR][1000 genomes]
rs59328315	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60813730	1.00[EUR][1000 genomes]
rs6733240	1.00[EUR][1000 genomes]
rs72919625	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582235	chr2:76881210-76997763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1006275	chr2:76885103-76929056	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1002822	chr2:76885103-76940701	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1010119	chr2:76904730-76949552	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76904600-76906600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr2:76904800-76906600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:76904800-76907200	Enhancers	Fetal Brain Male	brain
4	chr2:76905000-76908000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:76905200-76906400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:76905200-76906400	Enhancers	Fetal Brain Female	brain
7	chr2:76905200-76906600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:76905400-76906400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:76905400-76906600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr2:76905400-76906600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:76905600-76906200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr2:76905600-76906400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr2:76905600-76907600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:76905800-76906400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr2:76905800-76906400	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr2:76906000-76906400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr2:76906000-76906400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:76906000-76906400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr2:76906000-76906400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr2:76906000-76906400	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr2:76906000-76926600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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