Variant report

Variant	rs11896777
Chromosome Location	chr2:113372738-113372739
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11888272	1.00[EUR][1000 genomes]
rs11894217	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11897860	1.00[EUR][1000 genomes]
rs17042244	1.00[EUR][1000 genomes]
rs35477917	1.00[EUR][1000 genomes]
rs58234548	1.00[EUR][1000 genomes]
rs58677663	1.00[EUR][1000 genomes]
rs59684113	1.00[EUR][1000 genomes]
rs6713518	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6732118	1.00[EUR][1000 genomes]
rs6740389	1.00[EUR][1000 genomes]
rs72948443	1.00[EUR][1000 genomes]
rs72948451	1.00[EUR][1000 genomes]
rs72950328	1.00[EUR][1000 genomes]
rs7585978	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874877	chr2:113287964-113382054	Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv458997	chr2:113313794-113431092	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv582708	chr2:113313794-113431092	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113346800-113374600	Weak transcription	Ovary	ovary
2	chr2:113348600-113383600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:113349000-113384000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:113357800-113375200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:113357800-113384200	Weak transcription	Pancreas	Pancrea
6	chr2:113358000-113384000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:113364600-113372800	Weak transcription	Fetal Stomach	stomach
8	chr2:113370400-113383800	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:113370600-113377800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:113371600-113372800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:113371600-113372800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:113371600-113372800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:113371600-113374000	Enhancers	HepG2	liver
14	chr2:113371600-113382000	Weak transcription	Spleen	Spleen
15	chr2:113371800-113373000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:113371800-113373200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr2:113371800-113373200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr2:113371800-113373200	Strong transcription	Brain Germinal Matrix	brain
19	chr2:113372000-113372800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:113372000-113373000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr2:113372000-113373000	Strong transcription	Fetal Brain Female	brain
22	chr2:113372200-113372800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr2:113372200-113372800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr2:113372200-113373000	Strong transcription	Skeletal Muscle Male	skeletal muscle
25	chr2:113372200-113379800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr2:113372200-113384200	Weak transcription	Fetal Intestine Small	intestine
27	chr2:113372400-113372800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr2:113372400-113372800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr2:113372400-113373000	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr2:113372400-113384000	Weak transcription	Brain Anterior Caudate	brain
31	chr2:113372400-113388600	Weak transcription	Gastric	stomach
32	chr2:113372600-113373000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr2:113372600-113373000	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr2:113372600-113379800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links