Variant report

Variant	rs17042244
Chromosome Location	chr2:113456739-113456740
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11888272	1.00[EUR][1000 genomes]
rs11894217	1.00[EUR][1000 genomes]
rs11896777	1.00[EUR][1000 genomes]
rs11897860	1.00[EUR][1000 genomes]
rs35477917	1.00[EUR][1000 genomes]
rs58234548	1.00[EUR][1000 genomes]
rs58677663	1.00[EUR][1000 genomes]
rs59684113	1.00[EUR][1000 genomes]
rs6713518	1.00[EUR][1000 genomes]
rs6732118	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6740389	1.00[EUR][1000 genomes]
rs72948443	1.00[EUR][1000 genomes]
rs72948451	1.00[EUR][1000 genomes]
rs72950328	1.00[EUR][1000 genomes]
rs7585978	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428724	chr2:113376894-113555421	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1010106	chr2:113394981-113556071	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv526301	chr2:113451498-113495785	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113449200-113456800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:113451800-113462800	Weak transcription	Dnd41	blood
3	chr2:113454600-113458200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr2:113454800-113460600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr2:113455000-113458000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:113455000-113458200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:113455400-113457600	Enhancers	GM12878-XiMat	blood
8	chr2:113456000-113457800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr2:113456000-113460000	Enhancers	Primary hematopoietic stem cells	blood
10	chr2:113456200-113459400	Enhancers	Primary B cells from cord blood	blood
11	chr2:113456400-113457400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr2:113456400-113460200	Enhancers	Primary B cells from peripheral blood	blood
13	chr2:113456600-113460000	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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