Variant report

Variant	rs11898822
Chromosome Location	chr2:173392830-173392831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10497383	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10497384	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11883720	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11887938	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11892037	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11896937	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11897024	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1574258	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17676773	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17677404	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17727678	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17727732	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17739735	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17739946	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2178475	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2272498	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36002642	0.82[ASN][1000 genomes]
rs3792255	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3792256	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3828342	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4074913	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4405727	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4972510	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4972511	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4972832	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4972836	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4972837	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55802347	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59300838	0.81[EUR][1000 genomes]
rs59524026	0.82[AFR][1000 genomes]
rs60442917	0.80[AFR][1000 genomes]
rs6433359	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6433360	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6715294	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6728123	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6728419	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6731691	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6746138	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6755605	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72892573	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72892577	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72892596	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892601	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894305	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894375	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894389	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72894396	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72894400	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72896105	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7566921	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173376400-173397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173387400-173395000	Weak transcription	Primary T cells from cord blood	blood
3	chr2:173392000-173395000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:173392000-173398200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr2:173392000-173400000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr2:173392600-173419600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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