Variant report

Variant	rs36002642
Chromosome Location	chr2:173326199-173326200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173320793..173322566-chr2:173325005..173326952,2	MCF-7	breast:
2	chr2:173320023..173322995-chr2:173325583..173327892,3	MCF-7	breast:
3	chr2:173036872..173037875-chr2:173325699..173327479,12	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10497383	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10497384	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11883720	0.82[ASN][1000 genomes]
rs11887938	0.82[ASN][1000 genomes]
rs11892037	0.82[ASN][1000 genomes]
rs11896937	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11897024	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11898822	0.82[ASN][1000 genomes]
rs12469788	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1574258	0.86[ASN][1000 genomes]
rs17676243	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17676773	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17677404	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17727678	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17727732	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17739735	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17739946	0.95[ASN][1000 genomes]
rs2178475	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2272498	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34679972	0.81[AFR][1000 genomes]
rs3762620	0.83[AMR][1000 genomes]
rs3762621	0.83[AMR][1000 genomes]
rs3792255	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3792256	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3828342	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4074913	0.86[ASN][1000 genomes]
rs4405727	0.82[ASN][1000 genomes]
rs4972510	0.95[ASN][1000 genomes]
rs4972511	0.86[ASN][1000 genomes]
rs4972832	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4972836	0.82[ASN][1000 genomes]
rs4972837	0.82[ASN][1000 genomes]
rs55726436	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6433359	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6433360	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6715294	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6717877	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6728123	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6728419	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6731691	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6755605	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72892573	0.86[ASN][1000 genomes]
rs72892577	0.86[ASN][1000 genomes]
rs72892596	0.82[ASN][1000 genomes]
rs72892601	0.82[ASN][1000 genomes]
rs72894305	0.82[ASN][1000 genomes]
rs72894375	0.82[ASN][1000 genomes]
rs7566921	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173318800-173326200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr2:173319200-173330600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:173319800-173326400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:173320200-173326600	Enhancers	Duodenum Mucosa	Duodenum
5	chr2:173320600-173327200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:173320800-173326200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:173321000-173326400	Weak transcription	Right Ventricle	heart
8	chr2:173321000-173328000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:173321200-173326200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:173321200-173326200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr2:173321200-173326400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:173321200-173327400	Weak transcription	Small Intestine	intestine
13	chr2:173321400-173326200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr2:173321400-173326200	Weak transcription	Gastric	stomach
15	chr2:173321400-173326200	Weak transcription	Lung	lung
16	chr2:173321400-173326200	Weak transcription	Right Atrium	heart
17	chr2:173321400-173326400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr2:173321400-173327000	Weak transcription	Placenta	Placenta
19	chr2:173321400-173356000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:173322200-173326200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr2:173322200-173326400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr2:173322400-173326600	Enhancers	Primary T cells fromperipheralblood	blood
23	chr2:173322600-173326800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr2:173322600-173327000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr2:173322600-173327200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr2:173322600-173327400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr2:173322800-173326200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:173322800-173326200	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr2:173323200-173326200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr2:173323200-173328400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:173323400-173326200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr2:173323400-173326200	Weak transcription	Colonic Mucosa	Colon
33	chr2:173323400-173326400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr2:173323400-173329800	Weak transcription	HSMMtube	muscle
35	chr2:173323600-173326200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr2:173323800-173326200	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr2:173323800-173326400	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr2:173324000-173326400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr2:173324000-173330200	Weak transcription	Psoas Muscle	Psoas
40	chr2:173324400-173326800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr2:173324400-173327200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr2:173324400-173328400	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr2:173324400-173328600	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr2:173324400-173329600	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr2:173324400-173330600	Enhancers	HUVEC	blood vessel
46	chr2:173324600-173326200	Weak transcription	Left Ventricle	heart
47	chr2:173324600-173326800	Weak transcription	Esophagus	oesophagus
48	chr2:173324600-173330400	Enhancers	Primary hematopoietic stem cells	blood
49	chr2:173324800-173326200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr2:173324800-173326200	Weak transcription	Pancreas	Pancrea

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