Variant report

Variant	rs11899796
Chromosome Location	chr2:171606643-171606644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11885537	1.00[AMR][1000 genomes]
rs11885940	1.00[AMR][1000 genomes]
rs11886011	1.00[AMR][1000 genomes]
rs11887169	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11891213	1.00[AMR][1000 genomes]
rs11896015	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11896167	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11896169	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11900444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11901507	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11904485	1.00[AMR][1000 genomes]
rs34243096	1.00[AMR][1000 genomes]
rs4667655	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963746	chr2:171602620-171609432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171606600-171606800	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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