Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr2:171604311-171604801	K562	blood:	n/a	n/a
2	FOS	chr2:171604426-171604833	MCF10A-Er-Src	breast:	n/a	chr2:171604646-171604654
3	MYC	chr2:171604269-171604760	K562	blood:	n/a	chr2:171604331-171604341 chr2:171604646-171604655
4	HCFC1	chr2:171604301-171604496	K562	blood:	n/a	n/a
5	ARID3A	chr2:171604412-171604856	K562	blood:	n/a	n/a
6	FOS	chr2:171604379-171604838	MCF10A-Er-Src	breast:	n/a	chr2:171604646-171604654
7	JUND	chr2:171604380-171604840	K562	blood:	n/a	chr2:171604646-171604654
8	MYC	chr2:171604408-171604837	MCF10A-Er-Src	breast:	n/a	chr2:171604646-171604655
9	STAT3	chr2:171604380-171604786	MCF10A-Er-Src	breast:	n/a	n/a
10	CUX1	chr2:171604348-171604666	K562	blood:	n/a	n/a
11	MAZ	chr2:171604250-171604692	K562	blood:	n/a	chr2:171604646-171604655
12	MAX	chr2:171604207-171604752	NB4	blood:	n/a	chr2:171604331-171604341 chr2:171604646-171604655
13	JUN	chr2:171603862-171604928	K562	blood:	n/a	chr2:171604646-171604654
14	TBL1XR1	chr2:171604426-171604731	K562	blood:	n/a	n/a
15	POLR2A	chr2:171604346-171604766	MCF10A-Er-Src	breast:	n/a	n/a
16	ATF3	chr2:171604409-171604798	K562	blood:	n/a	n/a
17	ZNF384	chr2:171604272-171604928	K562	blood:	n/a	n/a
18	BHLHE40	chr2:171604296-171604789	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:171602544..171604977-chr2:171607272..171609245,2	K562	blood:
2	chr2:171603347..171605855-chr2:171623279..171625744,2	K562	blood:
3	chr2:171571145..171574823-chr2:171602056..171606730,4	K562	blood:
4	chr2:171525220..171526847-chr2:171603217..171605132,2	K562	blood:
5	chr2:171081877..171083554-chr2:171602935..171605209,2	K562	blood:
6	chr2:171594157..171598805-chr2:171599016..171605066,9	K562	blood:
7	chr2:171603392..171605168-chr2:171617778..171619766,2	K562	blood:
8	chr2:171571145..171574004-chr2:171604005..171606730,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11899796	1.00[YRI][hapmap]
rs16823157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17694726	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17700577	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17700773	0.89[AMR][1000 genomes]
rs17751683	0.89[AMR][1000 genomes]
rs1894918	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2883886	0.87[EUR][1000 genomes]
rs41393845	0.89[AMR][1000 genomes]
rs45465192	0.89[AMR][1000 genomes]
rs45473292	0.89[AMR][1000 genomes]
rs45486908	0.89[AMR][1000 genomes]
rs4667653	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4667654	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4667659	0.85[AMR][1000 genomes]
rs4668307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4668310	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668311	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668318	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668319	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668322	0.89[AMR][1000 genomes]
rs56852746	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963746	chr2:171602620-171609432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171601600-171606400	Weak transcription	Gastric	stomach
3	chr2:171604000-171604600	Enhancers	NHEK	skin
4	chr2:171604000-171604800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:171604000-171605200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:171604200-171604600	Flanking Active TSS	HMEC	breast
7	chr2:171604200-171604600	Flanking Active TSS	K562	blood
8	chr2:171604200-171604600	Enhancers	Osteobl	bone
9	chr2:171604200-171605200	Enhancers	Stomach Mucosa	stomach
10	chr2:171604400-171604600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:171604400-171604600	Flanking Active TSS	NH-A	brain

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