Variant report

Variant	rs45465192
Chromosome Location	chr2:171679654-171679655
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171678939..171680621-chr2:171682789..171685918,3	MCF-7	breast:
2	chr2:171671327..171674926-chr2:171677821..171681963,4	K562	blood:
3	chr2:171673426..171677773-chr2:171677821..171680534,5	K562	blood:

Variant related genes	Relation type
ENSG00000128683	Chromatin interaction
ENSG00000235934	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs16823157	0.89[AMR][1000 genomes]
rs16858900	1.00[AFR][1000 genomes]
rs16858920	1.00[AFR][1000 genomes]
rs17694726	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17700577	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17700773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17751683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1894918	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2160414	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3791875	0.80[AMR][1000 genomes]
rs3791879	0.80[AMR][1000 genomes]
rs41393845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45467694	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs45471500	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs45473292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45486908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45506192	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs45626540	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4667653	0.92[AMR][1000 genomes]
rs4667654	0.92[AMR][1000 genomes]
rs4667655	0.89[AMR][1000 genomes]
rs4667659	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4667660	0.86[AMR][1000 genomes]
rs4667661	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4668301	1.00[AFR][1000 genomes]
rs4668307	0.89[AMR][1000 genomes]
rs4668310	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668311	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668318	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668319	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4668328	1.00[AFR][1000 genomes]
rs4668330	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56852746	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs701491	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs769406	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171674400-171682200	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:171676400-171679800	Bivalent Enhancer	Fetal Stomach	stomach
3	chr2:171676800-171679800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
4	chr2:171676800-171680000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
5	chr2:171676800-171680600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:171676800-171680600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
7	chr2:171676800-171681200	Transcr. at gene 5' and 3'	Cortex derived primary cultured neurospheres	brain
8	chr2:171677000-171679800	Bivalent Enhancer	Esophagus	oesophagus
9	chr2:171677000-171680000	Flanking Bivalent TSS/Enh	NHEK	skin
10	chr2:171677200-171680600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr2:171677400-171680000	Bivalent Enhancer	Fetal Lung	lung
12	chr2:171677400-171680600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
13	chr2:171677600-171680600	Bivalent Enhancer	Placenta	Placenta
14	chr2:171677800-171679800	Bivalent Enhancer	Stomach Mucosa	stomach
15	chr2:171677800-171679800	Bivalent Enhancer	HMEC	breast
16	chr2:171677800-171679800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
17	chr2:171677800-171680000	Enhancers	Pancreas	Pancrea
18	chr2:171677800-171680400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:171677800-171680600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
20	chr2:171677800-171680600	Bivalent Enhancer	Liver	Liver
21	chr2:171677800-171680800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:171678000-171680200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:171678000-171680600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr2:171678000-171680800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr2:171678200-171680600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr2:171678200-171680600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:171678400-171680200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr2:171678600-171680000	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
29	chr2:171678600-171680000	Bivalent/Poised TSS	A549	lung
30	chr2:171678600-171680600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr2:171678800-171679800	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
32	chr2:171678800-171679800	Bivalent Enhancer	Fetal Intestine Small	intestine
33	chr2:171678800-171680600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr2:171679000-171679800	Bivalent Enhancer	HSMMtube	muscle
35	chr2:171679000-171680000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr2:171679000-171680000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
37	chr2:171679000-171680000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
38	chr2:171679000-171680000	Bivalent/Poised TSS	Fetal Kidney	kidney
39	chr2:171679000-171680000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
40	chr2:171679000-171680000	Bivalent Enhancer	HUVEC	blood vessel
41	chr2:171679000-171680600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
42	chr2:171679000-171680600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
43	chr2:171679000-171680800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
44	chr2:171679200-171680000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr2:171679200-171680000	Bivalent Enhancer	Fetal Intestine Large	intestine
46	chr2:171679200-171680400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
47	chr2:171679200-171680400	Enhancers	Lung	lung
48	chr2:171679200-171680600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr2:171679200-171681000	Enhancers	Spleen	Spleen
50	chr2:171679400-171679800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood

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