Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16858900	1.00[AFR][1000 genomes]
rs16858920	1.00[AFR][1000 genomes]
rs17700577	1.00[AFR][1000 genomes]
rs17700773	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17751683	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1894918	1.00[AFR][1000 genomes]
rs2160414	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs41393845	0.81[AMR][1000 genomes]
rs45465192	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs45471500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs45473292	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs45486908	0.81[AMR][1000 genomes]
rs45506192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs45626540	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4667661	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4668301	1.00[AFR][1000 genomes]
rs4668310	1.00[AFR][1000 genomes]
rs4668311	1.00[AFR][1000 genomes]
rs4668322	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4668328	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4668330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs701491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs769406	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508179	chr2:171708404-171736003	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171687800-171712600	Weak transcription	Brain Anterior Caudate	brain
2	chr2:171688800-171719000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:171690000-171715000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:171697200-171718400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:171699000-171730000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:171703000-171718600	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:171704000-171717000	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:171705200-171725200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:171706000-171712400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:171708400-171713200	Weak transcription	Brain Germinal Matrix	brain
11	chr2:171708800-171710600	Strong transcription	Aorta	Aorta
12	chr2:171709200-171712600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:171709400-171710400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:171709600-171710000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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