Variant report

Variant	rs45506192
Chromosome Location	chr2:171703677-171703678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171696976..171698746-chr2:171701808..171703928,2	K562	blood:
2	chr2:171701656..171704671-chr2:171708138..171712566,5	K562	blood:

Variant related genes	Relation type
ENSG00000128683	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16858900	1.00[AFR][1000 genomes]
rs16858920	1.00[AFR][1000 genomes]
rs17700577	1.00[AFR][1000 genomes]
rs17700773	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17751683	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1894918	1.00[AFR][1000 genomes]
rs2160414	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41393845	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs45465192	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs45467694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs45471500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45473292	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs45486908	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs45626540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4667659	0.87[EUR][1000 genomes]
rs4667661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4668301	1.00[AFR][1000 genomes]
rs4668310	1.00[AFR][1000 genomes]
rs4668311	1.00[AFR][1000 genomes]
rs4668322	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4668328	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4668329	0.89[EUR][1000 genomes]
rs4668330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs701491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs769406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171687800-171712600	Weak transcription	Brain Anterior Caudate	brain
2	chr2:171688800-171719000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:171689800-171705400	Weak transcription	Aorta	Aorta
4	chr2:171690000-171715000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:171693800-171706400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:171697000-171704000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:171697200-171718400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:171699000-171705400	Weak transcription	Brain Germinal Matrix	brain
9	chr2:171699000-171730000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:171699200-171704000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr2:171700800-171704200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:171700800-171704400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:171700800-171704400	Weak transcription	NHDF-Ad	bronchial
14	chr2:171700800-171705200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:171700800-171705200	Weak transcription	HSMMtube	muscle
16	chr2:171701000-171704200	Weak transcription	HSMM	muscle
17	chr2:171701000-171709400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:171701200-171704400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr2:171701400-171704400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr2:171701600-171704400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:171701800-171704400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:171702000-171703800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:171702000-171704200	Weak transcription	NHEK	skin
24	chr2:171702400-171704400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:171703000-171718600	Strong transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links