Variant report

Variant	rs4668310
Chromosome Location	chr2:171606464-171606465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171571145..171574823-chr2:171602056..171606730,4	K562	blood:
2	chr2:171599446..171601204-chr2:171604629..171607257,2	K562	blood:
3	chr2:171571145..171574004-chr2:171604005..171606730,2	K562	blood:

Variant related genes	Relation type
ENSG00000204335	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16823157	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16858900	1.00[AFR][1000 genomes]
rs16858920	1.00[AFR][1000 genomes]
rs17694726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17700577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17700773	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17751683	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs1894918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2160414	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41393845	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs45465192	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs45467694	1.00[AFR][1000 genomes]
rs45471500	1.00[AFR][1000 genomes]
rs45473292	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs45486908	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs45506192	1.00[AFR][1000 genomes]
rs4667653	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4667654	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4667655	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4667659	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4667660	0.83[AMR][1000 genomes]
rs4668301	1.00[AFR][1000 genomes]
rs4668307	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4668318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4668319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4668322	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668328	1.00[AFR][1000 genomes]
rs4668330	1.00[AFR][1000 genomes]
rs56852746	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs701491	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963746	chr2:171602620-171609432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171605200-171606600	Weak transcription	K562	blood

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