Variant report

Variant	rs4668307
Chromosome Location	chr2:171599884-171599885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171593069..171595980-chr2:171599016..171601460,4	K562	blood:
2	chr2:171598820..171602992-chr2:171626434..171628904,5	K562	blood:
3	chr2:171594157..171598805-chr2:171599016..171605066,9	K562	blood:
4	chr2:171599327..171601444-chr2:171623384..171626338,2	K562	blood:
5	chr2:171598979..171601021-chr2:171601414..171603949,2	K562	blood:
6	chr2:171569652..171572636-chr2:171598669..171601244,2	K562	blood:
7	chr2:171598608..171603078-chr2:171626081..171629316,7	K562	blood:
8	chr2:171599446..171601204-chr2:171604629..171607257,2	K562	blood:
9	chr2:171599691..171602406-chr2:171784049..171787334,4	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000234350	Chromatin interaction
ENSG00000115806	Chromatin interaction
ENSG00000222033	Chromatin interaction
ENSG00000239467	Chromatin interaction
ENSG00000204335	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11887169	0.81[AFR][1000 genomes]
rs11896167	0.81[AFR][1000 genomes]
rs11901507	0.81[AFR][1000 genomes]
rs16823157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17694726	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17700577	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17700773	0.89[AMR][1000 genomes]
rs17751683	0.89[AMR][1000 genomes]
rs1894918	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2883886	0.87[EUR][1000 genomes]
rs41393845	0.89[AMR][1000 genomes]
rs45465192	0.89[AMR][1000 genomes]
rs45473292	0.89[AMR][1000 genomes]
rs45486908	0.89[AMR][1000 genomes]
rs4667653	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4667654	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4667655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4667659	0.85[AMR][1000 genomes]
rs4668310	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668311	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668318	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668319	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668322	0.89[AMR][1000 genomes]
rs56852746	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171593600-171600800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:171594000-171600200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr2:171595200-171600200	Weak transcription	Gastric	stomach
5	chr2:171596200-171600200	Enhancers	K562	blood
6	chr2:171596200-171601200	Weak transcription	HSMMtube	muscle
7	chr2:171597600-171603800	Weak transcription	HMEC	breast
8	chr2:171597800-171604000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:171598000-171603800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:171598400-171600600	Enhancers	Fetal Intestine Small	intestine
11	chr2:171599000-171600000	Weak transcription	Fetal Intestine Large	intestine
12	chr2:171599800-171600000	Enhancers	Duodenum Mucosa	Duodenum
13	chr2:171599800-171600400	Enhancers	HepG2	liver
14	chr2:171599800-171601800	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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