Variant report
| Variant | rs2883886 |
|---|---|
| Chromosome Location | chr2:171653810-171653811 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:171639227..171641191-chr2:171653402..171655212,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000204334 | Chromatin interaction |
| ENSG00000222509 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10048650 | 0.81[AFR][1000 genomes] |
| rs11675773 | 0.81[AFR][1000 genomes] |
| rs12692960 | 0.83[AFR][1000 genomes] |
| rs1362487 | 0.81[AFR][1000 genomes] |
| rs1362490 | 0.80[YRI][hapmap] |
| rs1420387 | 0.83[AFR][1000 genomes] |
| rs1420390 | 0.92[AFR][1000 genomes] |
| rs16823157 | 0.87[EUR][1000 genomes] |
| rs2287110 | 0.91[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs2287111 | 0.95[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs2883887 | 0.81[AFR][1000 genomes] |
| rs3791853 | 1.00[CEU][hapmap] |
| rs4667653 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs4667654 | 0.87[EUR][1000 genomes] |
| rs4667655 | 0.87[EUR][1000 genomes] |
| rs4668307 | 0.87[EUR][1000 genomes] |
| rs4668311 | 1.00[CEU][hapmap] |
| rs4668317 | 0.81[AFR][1000 genomes] |
| rs4668321 | 0.85[AFR][1000 genomes] |
| rs6711176 | 0.80[YRI][hapmap] |
| rs6721280 | 0.81[AFR][1000 genomes] |
| rs6749003 | 0.81[AFR][1000 genomes] |
| rs6759584 | 0.95[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs701491 | 1.00[CEU][hapmap] |
| rs769406 | 1.00[CEU][hapmap] |
| rs954321 | 0.88[YRI][hapmap] |
| rs9973711 | 0.82[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1806894 | chr2:171651783-171679041 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:171629600-171658800 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 2 | chr2:171642400-171669000 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
