Variant report

Variant	rs3791853
Chromosome Location	chr2:171695070-171695071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2883886	1.00[CEU][hapmap]
rs4667653	1.00[CEU][hapmap]
rs4668311	1.00[CEU][hapmap]
rs4668329	0.82[EUR][1000 genomes]
rs56932796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60418431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60669389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs701491	1.00[CEU][hapmap]
rs769406	1.00[CEU][hapmap]
rs769411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171685800-171699000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:171686400-171699200	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:171687800-171712600	Weak transcription	Brain Anterior Caudate	brain
4	chr2:171688800-171719000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:171689800-171696200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:171689800-171705400	Weak transcription	Aorta	Aorta
7	chr2:171690000-171715000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:171690200-171698800	Weak transcription	NHEK	skin
9	chr2:171690600-171700400	Weak transcription	Hela-S3	cervix
10	chr2:171692200-171696800	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr2:171693000-171697400	Weak transcription	K562	blood
12	chr2:171693800-171698800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:171693800-171706400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr2:171694000-171695400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:171694200-171698600	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr2:171694600-171696800	Weak transcription	Brain Germinal Matrix	brain
17	chr2:171694600-171697000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:171694800-171696400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:171694800-171699600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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