Variant report

Variant	rs954321
Chromosome Location	chr2:171642356-171642357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171633926..171636213-chr2:171641664..171644131,2	K562	blood:
2	chr2:171638769..171640365-chr2:171642319..171644011,2	K562	blood:

Variant related genes	Relation type
ENSG00000204334	Chromatin interaction
ENSG00000222509	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10165379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10175644	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10181282	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10194303	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10432420	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10930438	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11895153	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs12612710	0.86[EUR][1000 genomes]
rs12613472	0.87[EUR][1000 genomes]
rs12619010	0.86[EUR][1000 genomes]
rs12692960	0.82[AFR][1000 genomes]
rs12994793	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13028382	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1362487	0.86[AFR][1000 genomes]
rs1362489	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1362490	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1894919	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2287110	0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs2287111	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs2883886	0.88[YRI][hapmap]
rs34002163	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3749036	0.81[EUR][1000 genomes]
rs3764915	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3764916	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4132720	0.87[EUR][1000 genomes]
rs4668317	0.86[AFR][1000 genomes]
rs6433235	0.86[EUR][1000 genomes]
rs6433238	0.87[EUR][1000 genomes]
rs6433246	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6433247	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6433248	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66833017	0.86[EUR][1000 genomes]
rs6711176	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6723611	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6726371	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6733809	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6736129	0.84[ASN][1000 genomes]
rs6738022	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6757195	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6759584	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs7580460	0.84[EUR][1000 genomes]
rs7608979	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs869954	0.87[EUR][1000 genomes]
rs953680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9973711	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171629600-171658800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:171635200-171649800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:171635600-171646800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:171635800-171643600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:171640600-171643600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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