Variant report

Variant	rs10194303
Chromosome Location	chr2:171596034-171596035
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171595899..171597682-chr2:171601375..171604248,2	MCF-7	breast:
2	chr2:171594157..171598805-chr2:171599016..171605066,9	K562	blood:
3	chr2:171572262..171574374-chr2:171596023..171597938,2	K562	blood:

Variant related genes	Relation type
ENSG00000204335	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10165379	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10175644	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10181282	0.80[EUR][1000 genomes]
rs10930438	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11895153	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12612710	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12613472	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12619010	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12994793	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13028382	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1362489	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1362490	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1894919	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34002163	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3749036	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3764915	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3764916	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4132720	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6433235	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6433238	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6433246	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6433247	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6433248	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66833017	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6711176	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6723611	0.81[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6726371	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6733809	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6738022	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6757195	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7580460	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7608979	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs869954	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs953680	0.88[ASW][hapmap];0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs954321	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9973711	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10194303	MYO3B	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171593200-171598000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:171593600-171600800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:171594000-171597200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:171594000-171600200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:171594200-171596800	Enhancers	Stomach Mucosa	stomach
7	chr2:171594200-171597600	Enhancers	HMEC	breast
8	chr2:171594400-171596400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:171594400-171596400	Enhancers	HSMM	muscle
10	chr2:171594400-171596600	Enhancers	Fetal Intestine Small	intestine
11	chr2:171594400-171597400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:171594600-171596600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:171595000-171597800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:171595200-171596400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:171595200-171596400	Enhancers	NH-A	brain
16	chr2:171595200-171596400	Enhancers	NHDF-Ad	bronchial
17	chr2:171595200-171596400	Enhancers	Osteobl	bone
18	chr2:171595200-171596600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:171595200-171596800	Enhancers	Fetal Intestine Large	intestine
20	chr2:171595200-171600200	Weak transcription	Gastric	stomach
21	chr2:171595400-171596200	Enhancers	HSMMtube	muscle
22	chr2:171596000-171596200	Enhancers	A549	lung
23	chr2:171596000-171596400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr2:171596000-171596400	Enhancers	NHLF	lung
25	chr2:171596000-171596600	Enhancers	Muscle Satellite Cultured Cells	--
26	chr2:171596000-171598000	Enhancers	NHEK	skin

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