Variant report

Variant	rs6738022
Chromosome Location	chr2:171617027-171617028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171614042..171617597-chr2:171625454..171629834,4	K562	blood:
2	chr2:171611723..171614274-chr2:171615104..171618068,2	K562	blood:
3	chr2:171616652..171619291-chr2:171620121..171623028,3	K562	blood:

Variant related genes	Relation type
ENSG00000239467	Chromatin interaction
ENSG00000234350	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10165379	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10175644	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10181282	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10194303	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10930438	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11895153	0.87[EUR][1000 genomes]
rs12612710	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12613472	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12619010	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12994793	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13028382	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1362489	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1362490	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1894919	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34002163	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3749036	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3764915	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3764916	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4132720	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6433235	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6433238	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6433246	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6433247	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6433248	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66833017	0.91[EUR][1000 genomes]
rs6711176	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6723611	0.83[EUR][1000 genomes]
rs6726371	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6757195	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7580460	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7608979	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs869954	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs953680	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs954321	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9973711	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6738022	GAD1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171613200-171626800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:171615600-171618000	Weak transcription	K562	blood

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